Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01062 ATGTTGTTTGGGTTAACGGTGTGGTTTTTGTTTTTCCTGGTGGTGAAGCAGTGGTTGGTTCTGGTGACGCTCTGGAAGGCTTGCGCGGGACCACTGGTGGATGTTCCTCGTGTTGGCCAGAGAGTGTTTTATTTTCCACAAGGCCACATGGAGCAATTAGAGGCTTCAACCAACCAGGAATTGAATCAGAGGATTCCTCTGCTGCACCTTCCCACGAAGATCCTTTGTCGCGTCGTGAACGTTCATTTACTGAAGATGGTGGAAGGGGCATCTTGGTTTTGGAGTTTCTATTATCGTGAAAAGTTTAAAATTGAGATTGTGGCTGAGCAAGAAACGGATGAGGTTTATGCGCAGATCACTTTGGTGCCGGAATCTAATCAAGATGAGCCTACAAGTCCTGATCCGTGCACTGATGAACCTACAAGGGCACCGGCTCACTCGTTCTGCAAGGTCTTGACTGCATCTGATACTAGCACCCATGGTGGCTTCTCTGTTCTCAGGAAACATGCCACTGAGTGCCTTCCTGCATTGGATATGTCCCAACCAACACCAACCCAGGAATTGGTTGCAAAGGATCTTCATGGTTATGAATGGCGGTTTAAGCATATATTTAGAGGTAAAGGAGATGGGAAATTGATGAGTCAGCCACGCAGACACTTGCTCACAACTGGATGGAGTACCTTTGTGACTTCCAAAAGATTAGTTGCAGGGGATACCTTTGTGTTCTTGAGAGGGGACAATGGGGAATTACGTGTTGGAGTGAGACGTCTAGCTCGCCAGGCAAGTAGCATGCCTTCATCTGTGATCTCCAGTCAAAGCATGCACCTGGGAGTTCTTGCAACTGCCTCTCATGCTGTTGCAACTCAGACTCTTTTTGTGGTATATTATAAGCCAAGGACGAGCCAGTTCATCATTGGAGTGAACAAGTATTTGGAGGCTGTGAGCACGAAGTTTGGTGTTGGCATGAGGTTTAAGATGAGATTCGAGGGGGATGATTCCGCTGAGACTGACAAAAGATTTTCGGGTACCATAGTTGGAATTGAAGATATTTCTCCTCATTGGGAAAATTCAAAATGGCGATCGCTGAAGGTTCAATGGGATGAACTTGCAGCTGTTCCAAGACCTGAGAGGGTTTCACCGTGGGAAATAGAGCCATTTGTAGCTTCTTCTACTACACCCTCGGTTCAACCCACTATTGTGAAGACTAAAAGGCCCCGACCATCCAGCGAAGTTCCAGATGTTGATGCAACATCCACTGCTTCTGTTTTCTGGGATGCTGATCTGCCACAGCCTGATACGACACAAATCAATGTTTTGGCCGAAAGCAAACAGAATGACAATACTGGTACATGGCATCATATGCAAACTGACATGAATAGTAAAAGCAACAGCAACAACACTATGTTAAGGAATCAGACCGAAGGAAGTTGGCTCTCGTCTCCCCATTCCAGTTGTCCATCTCAATTGTTTCAAGACACAACAGATGATAGCAAGAGCGTCTCAGCTTGGCCTGTTTCAAAGCCTCATCCGTCCAGATTGAACAATGAGCATGCGCTTGACCAAGTTGACAAGGAGAGCAAAGTTGAGACTGCTACAAGTTATCGGTTGTTTGGAATTGATCTTATTGATCATTCTAGGAACTCACCTGCTGTAGAGAAGGCATCTCCGCTTGCAGTAAATGTACCCAAAGTTACTACTGAAGGATGTACTAGCACCTTGTCCCAAAGAGATGCTGGCCATATGTCGGAGGTACCAAAGGCTTCTTCCAAGGAGAGGAAACAGGAACAGCAACAAGTGTCTCCGAAGGAGACTCTGAGCAAGCAAATTTCTAGAAGTCGCACTAAGGGTGTTGCAGTGGGTCGTGCTGTAGATTTAACAATGTTGGATGGGTATAATCAACTTATAAATGAATTAGAGGAGATGTTTGACATAAAGGGACAGCTTCAAAACAGGAATAAGTGGGAAATTGTCTTCACTGATGATGAAGGTGACATGATGCTTGTGGGAGATGATCCATGGCCTGAATTCTGTAGTATGGTGAGAAGAATCTTCATTTGCTCCAGTCAGGATGTGAAGAAGATGAACTGTGGAAGCAAACTGCCAATCTCTTCAGTGGAAGATGGGACTCACCCAAATGCTGATCCTTCTTGTTGCTTCAATTGTTTGTGGGAAGGAAGTAGGTCTATTTGGGCTGGGTAA 2199 0.4557 MLFGLTVWFLFFLVVKQWLVLVTLWKACAGPLVDVPRVGQRVFYFPQGHMEQLEASTNQELNQRIPLLHLPTKILCRVVNVHLLKMVEGASWFWSFYYREKFKIEIVAEQETDEVYAQITLVPESNQDEPTSPDPCTDEPTRAPAHSFCKVLTASDTSTHGGFSVLRKHATECLPALDMSQPTPTQELVAKDLHGYEWRFKHIFRGKGDGKLMSQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGDNGELRVGVRRLARQASSMPSSVISSQSMHLGVLATASHAVATQTLFVVYYKPRTSQFIIGVNKYLEAVSTKFGVGMRFKMRFEGDDSAETDKRFSGTIVGIEDISPHWENSKWRSLKVQWDELAAVPRPERVSPWEIEPFVASSTTPSVQPTIVKTKRPRPSSEVPDVDATSTASVFWDADLPQPDTTQINVLAESKQNDNTGTWHHMQTDMNSKSNSNNTMLRNQTEGSWLSSPHSSCPSQLFQDTTDDSKSVSAWPVSKPHPSRLNNEHALDQVDKESKVETATSYRLFGIDLIDHSRNSPAVEKASPLAVNVPKVTTEGCTSTLSQRDAGHMSEVPKASSKERKQEQQQVSPKETLSKQISRSRTKGVAVGRAVDLTMLDGYNQLINELEEMFDIKGQLQNRNKWEIVFTDDEGDMMLVGDDPWPEFCSMVRRIFICSSQDVKKMNCGSKLPISSVEDGTHPNADPSCCFNCLWEGSRSIWAG 732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01062 732 Pfam Auxin response factor 282 363 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vimu9g01062 732 ProSiteProfiles PB1 domain profile. 607 688 IPR000270 GO:0005515
Vimu9g01062 732 MobiDBLite consensus disorder prediction 457 514 - -
Vimu9g01062 732 ProSiteProfiles B3 DNA-binding domain profile. 148 258 IPR003340 GO:0003677
Vimu9g01062 732 MobiDBLite consensus disorder prediction 568 612 - -
Vimu9g01062 732 MobiDBLite consensus disorder prediction 457 501 - -
Vimu9g01062 732 Gene3D - 317 392 - -
Vimu9g01062 732 FunFam Auxin response factor 146 258 - -
Vimu9g01062 732 CDD B3_DNA 146 256 IPR003340 GO:0003677
Vimu9g01062 732 SUPERFAMILY DNA-binding pseudobarrel domain 139 285 IPR015300 -
Vimu9g01062 732 FunFam Auxin response factor 317 390 - -
Vimu9g01062 732 Gene3D - 605 695 - -
Vimu9g01062 732 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 23 695 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vimu9g01062 732 Pfam AUX/IAA family 588 691 IPR033389 -
Vimu9g01062 732 SMART B3_2 148 258 IPR003340 GO:0003677
Vimu9g01062 732 Pfam B3 DNA binding domain 148 256 IPR003340 GO:0003677
Vimu9g01062 732 Coils Coil 631 651 - -
Vimu9g01062 732 MobiDBLite consensus disorder prediction 583 598 - -
Vimu9g01062 732 Gene3D - 145 257 IPR015300 -
Vimu9g01062 732 SUPERFAMILY CAD & PB1 domains 614 683 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01062 Vimu-Chr9 17765926 17769650 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g01062 24 700 B3 DNA Binding Superfamily AT4G23980 55.794 0.0 674
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vimu9g01062 B3 5.4e-19 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01062 K14486 - gmx:100779003 1172.15