Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01059 ATGGCTGAGGGTTTTGAGGCTTACCATGTGCCACAGCAAAGCAGAAGAGATAAGCTAAGAGTTGTGGTGACACAGAACCAACATGATCTCGTTGAACCCTCCACTTTGCTTCCTTTGTACGACCCTTCTTCGTTCATATCTTCTGATTTGCTAACGAGCTTCCACAACAGCCACAAACAGAACTTGGGTTGTGGTGTGAAGGAAGAACGTGCAAATTTGATGATGGGTTTTGCAGGAAGAGGAGGTGAAGGTAGAGGAGTCATGAACAATGGTTCTTCTTCTTCTTTGTGTTGTTCTTCTAACTCCTCATCGGTTTCTTATTTGGATCCTGAATCCTCGTTGCCTTTGAACCAAGCTACAATTCAGGTCATTAACAACAACAACAACAACATGTTTCTTTACCAAGCACAGAACCTGGGAGAGTTTGACCAGGGTTATAATAATAATAATGGTAGTGAGATCATGGTGTTTAAGCCCGAGCCTTTGTCTTTGTCTCTCTCATCACATAGCAAAGGTGTGAATCTTCAGCGATATGGATCTGTGGTTTGTGGTGATAAGGTTGGTGGGGTTGGTGGCGATGGTGGATGTGTGGTTTATGGTGGTTCTGGATTGAATGAAGCTTCTAGGTGCACGGTGCCTATGGGGCCATTTACTGGTTATGCTTCTATATTGAAGGGATCGAGGTTCCTGAAACCTGCACAGCAATTATTGGAAGAGTTATGTGATGTTGGTGGAGTCTGTGCTGAAAAGATGGTGGCTGATGCATCATTGATGGAACCTGTTCCTCTTCTTCCTCCTGAAAATTCAAGTGAAGATCTACTAGGGGATCAAGGGGGTGACCATGGTCGCAAAAAGTCAAGACTGTTAACTATGCTTGACGAGGTTTACAGGAGGTACAGGCAATACTATCAGCAGATGCACGCAGTAGTAACATCATTTGAGTATGTTTCAGGCCTTCGCAATGCAGCTCCCTATGCAAGTTTGGCAATAAAAGCCATGTCCAAACATTTTAGATGCTTGAAGAATGCAATTACTGACCAACTTCAGTTTGCCAATAAAGCTCATTTTCACATCAGCAACAGGAAGGATGAATCTTCAAGGTTTGGCAACAGTGACAGAGGCCCTTACAGCCAAAGGCCAGGGTTTCTTGAGCACCAACCTGTTTGGCGGCCTCAAAGAGGACTCCCCGAGCGTGCCGTGACTGTTCTCAGAGCATGGTTGTTTGAGCACTTTTTGCATCCTTATCCTACTGATACAGACAAGCTAATGTTGGCTAAACAAACTGGTCTATCTCGTAGCCAGGTGTCTAATTGGTTCATTAATGCAAGAGTAAGGCTCTGGAAACCAATGGTGGAAGAAATACATATGCTAGAAACACGGCAGGCTCAAAATTTAAAGAATTCACAGAAGGAAGAACATTGCAGGAACAAGTCAAGTGATCAATTACCTTCTGATAACTCCATTGTTTCTGAGAATCCATCTGGCTCAACAGAAAAGTTTCAGGGTCCTCCTTACAAGCGAGCTACAGATGAACTTCCCAACATACCAGTTCGGACTCAGGAACAACTGAATCTTCCTTGCACAAGCAATCAGCCAGGGAGTGTTGAAGTGAGCATGGGTGGCAGTGCAAGCAATAGTGTGTCACTCACACTAGGACTTCATCAAAATCATGGCATTGGTTTGGCTGAACCCTTTACCCTGAATGCAGCACAGCGATTTGGTGTTGCTCTTGAAACCAACAATGAAGGCTATGTGATGAGTGGATATGAGTCACAGAATAGGCATTTTGGAAGAGATGTCATTGGAGGACAACTGGTGCATGATTTTGTTGGCTGA 1836 0.4423 MAEGFEAYHVPQQSRRDKLRVVVTQNQHDLVEPSTLLPLYDPSSFISSDLLTSFHNSHKQNLGCGVKEERANLMMGFAGRGGEGRGVMNNGSSSSLCCSSNSSSVSYLDPESSLPLNQATIQVINNNNNNMFLYQAQNLGEFDQGYNNNNGSEIMVFKPEPLSLSLSSHSKGVNLQRYGSVVCGDKVGGVGGDGGCVVYGGSGLNEASRCTVPMGPFTGYASILKGSRFLKPAQQLLEELCDVGGVCAEKMVADASLMEPVPLLPPENSSEDLLGDQGGDHGRKKSRLLTMLDEVYRRYRQYYQQMHAVVTSFEYVSGLRNAAPYASLAIKAMSKHFRCLKNAITDQLQFANKAHFHISNRKDESSRFGNSDRGPYSQRPGFLEHQPVWRPQRGLPERAVTVLRAWLFEHFLHPYPTDTDKLMLAKQTGLSRSQVSNWFINARVRLWKPMVEEIHMLETRQAQNLKNSQKEEHCRNKSSDQLPSDNSIVSENPSGSTEKFQGPPYKRATDELPNIPVRTQEQLNLPCTSNQPGSVEVSMGGSASNSVSLTLGLHQNHGIGLAEPFTLNAAQRFGVALETNNEGYVMSGYESQNRHFGRDVIGGQLVHDFVG 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01059 611 SMART HOX_1 389 453 IPR001356 GO:0003677
Vimu9g01059 611 MobiDBLite consensus disorder prediction 480 499 - -
Vimu9g01059 611 FunFam BEL1-like homeodomain protein 9 392 454 - -
Vimu9g01059 611 Pfam Homeobox KN domain 406 445 IPR008422 GO:0003677|GO:0006355
Vimu9g01059 611 SMART prehox3 218 346 IPR006563 -
Vimu9g01059 611 Gene3D - 392 454 - -
Vimu9g01059 611 SUPERFAMILY Homeodomain-like 391 456 IPR009057 -
Vimu9g01059 611 MobiDBLite consensus disorder prediction 361 382 - -
Vimu9g01059 611 Pfam Associated with HOX 223 345 IPR006563 -
Vimu9g01059 611 MobiDBLite consensus disorder prediction 465 479 - -
Vimu9g01059 611 CDD homeodomain 389 450 IPR001356 GO:0003677
Vimu9g01059 611 MobiDBLite consensus disorder prediction 462 510 - -
Vimu9g01059 611 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 114 470 - -
Vimu9g01059 611 ProSiteProfiles 'Homeobox' domain profile. 386 449 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01059 Vimu-Chr9 17593567 17600109 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g01059 153 611 Homeobox Transcription Factor Family AT5G02030 51.434 1.16e-121 370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Vimu9g01059 POX 1e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01059 - - gmx:100805512 1008.44