Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01058 ATGATTCCTACACACACGTACCACAGGAAGACGGTTGATGGCGGTGTGGTTTCCGACAACGGCAATGAAGGTGAGACATGTGTGGTGTGCTTGGGAGAGTTTGAGGAGGGTGAGGAGCTAAGGACGTTGCCTGAGTGTTTGCACTGTTTCCAGGTGGCATGCATTGACACGTGGTTGTGTTCGCATTCCAGTTGCCCCGTTTGCCGGAGCATTGCCGCGCCGTCTCTGGAGCATGATTTGAACGATGTGAATGAGCACCGCATACATATAACGCAATTTTCCATTGTACAAAATGGCTTTCTGTTACTAGGGTGA 315 0.5048 MIPTHTYHRKTVDGGVVSDNGNEGETCVVCLGEFEEGEELRTLPECLHCFQVACIDTWLCSHSSCPVCRSIAAPSLEHDLNDVNEHRIHITQFSIVQNGFLLLG 104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01058 104 SMART ring_2 27 68 IPR001841 -
Vimu9g01058 104 Pfam Ring finger domain 26 69 IPR001841 -
Vimu9g01058 104 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 74 IPR013083 -
Vimu9g01058 104 ProSiteProfiles Zinc finger RING-type profile. 27 69 IPR001841 -
Vimu9g01058 104 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 2 71 IPR044675 -
Vimu9g01058 104 SUPERFAMILY RING/U-box 21 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01058 Vimu-Chr9 17574833 17575147 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g01058 7 99 C3H Transcription Factor Family AT3G03550 41.935 2.85e-18 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01058 - - var:108336104 203.756