Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01054 ATGACACATTCTCTGTTTCTCTTTCATTTTCTTCTTCTCATATTTCACGTTTTCTTCAGTTTCATTCCAGCGCTTTCACTCTCCTCCGACGGCCTCGCGCTTCTCGCTCTCAAGTCCGCCGTCGACCAGCCTTCCTCCGCTTTCTCCGACTGGAACGACGGCGACGTCACGCCCTGCGCCTGGTCGGGAATCGTTTGCGCCAACATCTCCGGCGAGGAGGACCCCCGCGTCGTCGGAATCGCCCTCGCCGGGAAATCCATCTCCGGTTACCTCCCGTCAGAGCTTGGCTCTCTGCGCTTCCTCCGCCGACTTAACCTCCACGACAACGCCTTCTCCGGCGTCCTCCCGGCGCAGCTCTCCAACGCTACCGCACTCCACAGCCTCTTCCTCCACCGTAACAACCTCTCCGGCCCCATCCCCCGCTCTCTCTGTAGCCTCCCGCGCCTCCAAAATCTCGACCTCTCCGAAAATGCATTCTCCGGTCATATTCCCGACCACCTCGGAAACTGCAAGAACCTCCAGCGCCTTATCGTCGCCGGCAACAGATTTTCGGGTGAGATTCCCGCCGGCGTGTGGCCGGAACTTCAGAACCTCCTCCAACTCGACCTCTCCGCGAATGAGTTAACCGGTTCAATCCCTGACGAAATTGGAACCCTAGTTTCCCTCTCTGGCACGCTGAACCTCTCCTTCAACCACCTCTCCGGTAAGATTCCGGCGTCGTTGGGAAAATTACCGGCGACGGTGAGCTTCGACTTCAGAAACAACAACCTCAGCGGAGAAATTCCACAAACGGGGTCGTTTTCAAACCAAGGTCCCACGGCGTTCCTTGGAAATCCTAACCTATGCGGGTTTCCTCTTAGAAAATCATGTTCCGGTTCGGACCGGGATTTTTCTCCCGGTTCGGATCAAAACAAACCGGTCCACCCGTCAAAGGGGTTAAGCCCCGGTTTAATTATTTTAATCTCCGCGGCTGATGCTGCTGTTGTGGCCTTCATTGGGCTTGTGATTGTTTATGTCTATTGGAAGAAAAAGGATGATGAGAATGCGTGTAGTTGCATTAGGAGAAGAAAGTTTGGCGAAGAGAAAGGGAATGTGTGTTTCTGTGGTGGATTCCCATGTGTTAGTGGGGAGAAAAGTGATGATGACGATGGTGATGAAGATTATGAGGTGGAGGGGGCTGAGGGGGAGGGTGAAGGAGAATTGGTGAGGATTGATAAGGGATTGAGTTTCGAACTTGATGAGTTGTTGAGGGCTTCTGCTTACGTGTTGGGGAAGAGTGGGTTGGGAATTGTGTATAAGGTGGTGTTGGGGAATGGGGTTCCTGTGGCTGTGAGGAGGCTGGGGGAGGGAGGGGAACAGAGGTACAAGGACTTTGCTGCAGAGGTTATGGCCATTGGGAAGGTCAAGCACCCTAATGTTGTAAGGTTGAGGGCTTACTATTGGGCACATGATGAGAAGCTTCTCATCAGTGATTTCATCTCCAATGGCAATCTCACACATGCCCTTAGAGGGAGAAATGGCCAACCATCTACAAATCTTTCATGGTCCACCAGGCTGAAAATCGCAAAAGGAACAGCCAGGGGCTTGGCCTATCTCCACGAATGCAGCCCAAGAAAGTTCGTCCATGGTGACATTAAACCCTCCAACATCCTACTTGACAATGACTTCCAACCCTACATTTCTGATTTCGGCCTGAACCGTCTGATCAGCATTACCGGCAATAACCCCTCCACCGGCGGATTCATGGGTGGAGCTCTTCCTTACATGAAGTCTTCACAGAAAGAGAGAACCGACAATTACAAAGCCCCCGAGGCTCGTGTCCCTGGGTGCAGACCCACCCAGAAATGGGATGTGTACTCATTTGGGGTTGTGTTGCTTGAAATACTAACTGGGAGGTCACCAGAATCATCTCCCACCACATCAACTTCCATGGAAGTCCCTGACTTGGTAAGGTGGGTGAGGAAAGGGTTCGATCAAGAAAGCCCGTTATCTGAGATGGTTGATCCATCGCTGCTCCAAGAAGTGCGTGTTAAGAAAGAGGTGCTGGCTGTGTTTCACGTAGCTTTGGCTTGCACTGAAGGAGACCCTGAGGCTCGGCCAAGGATGAAAACTGTCTCTGAAAATCTTGACAAAATTGGAACTTAA 2145 0.5212 MTHSLFLFHFLLLIFHVFFSFIPALSLSSDGLALLALKSAVDQPSSAFSDWNDGDVTPCAWSGIVCANISGEEDPRVVGIALAGKSISGYLPSELGSLRFLRRLNLHDNAFSGVLPAQLSNATALHSLFLHRNNLSGPIPRSLCSLPRLQNLDLSENAFSGHIPDHLGNCKNLQRLIVAGNRFSGEIPAGVWPELQNLLQLDLSANELTGSIPDEIGTLVSLSGTLNLSFNHLSGKIPASLGKLPATVSFDFRNNNLSGEIPQTGSFSNQGPTAFLGNPNLCGFPLRKSCSGSDRDFSPGSDQNKPVHPSKGLSPGLIILISAADAAVVAFIGLVIVYVYWKKKDDENACSCIRRRKFGEEKGNVCFCGGFPCVSGEKSDDDDGDEDYEVEGAEGEGEGELVRIDKGLSFELDELLRASAYVLGKSGLGIVYKVVLGNGVPVAVRRLGEGGEQRYKDFAAEVMAIGKVKHPNVVRLRAYYWAHDEKLLISDFISNGNLTHALRGRNGQPSTNLSWSTRLKIAKGTARGLAYLHECSPRKFVHGDIKPSNILLDNDFQPYISDFGLNRLISITGNNPSTGGFMGGALPYMKSSQKERTDNYKAPEARVPGCRPTQKWDVYSFGVVLLEILTGRSPESSPTTSTSMEVPDLVRWVRKGFDQESPLSEMVDPSLLQEVRVKKEVLAVFHVALACTEGDPEARPRMKTVSENLDKIGT 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01054 714 Pfam Leucine rich repeat N-terminal domain 28 66 IPR013210 -
Vimu9g01054 714 Gene3D Ribonuclease Inhibitor 192 292 IPR032675 -
Vimu9g01054 714 SUPERFAMILY Protein kinase-like (PK-like) 422 708 IPR011009 -
Vimu9g01054 714 SUPERFAMILY L domain-like 28 287 - -
Vimu9g01054 714 FunFam Os07g0541700 protein 495 583 - -
Vimu9g01054 714 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 27 192 - -
Vimu9g01054 714 CDD STKc_IRAK 423 712 - -
Vimu9g01054 714 ProSiteProfiles Protein kinase domain profile. 417 712 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu9g01054 714 FunFam Leucine-rich repeat receptor-like protein kinase 197 292 - -
Vimu9g01054 714 Gene3D Phosphorylase Kinase; domain 1 409 492 - -
Vimu9g01054 714 FunFam Leucine-rich repeat receptor-like protein kinase 400 492 - -
Vimu9g01054 714 Pfam Protein kinase domain 422 648 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu9g01054 714 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 166 712 IPR046959 -
Vimu9g01054 714 ProSitePatterns Serine/Threonine protein kinases active-site signature. 540 552 IPR008271 GO:0004672|GO:0006468
Vimu9g01054 714 Pfam Leucine rich repeat 101 158 IPR001611 GO:0005515
Vimu9g01054 714 Gene3D Ribonuclease Inhibitor 27 191 IPR032675 -
Vimu9g01054 714 Gene3D Transferase(Phosphotransferase) domain 1 493 714 - -
Vimu9g01054 714 SMART serkin_6 421 712 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu9g01054 714 SMART LRR_typ_2 146 170 IPR003591 -
Vimu9g01054 714 SMART LRR_typ_2 98 121 IPR003591 -
Vimu9g01054 714 SMART LRR_typ_2 195 219 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01054 Vimu-Chr9 17498952 17502637 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g01054 23 712 Receptor kinase-like Gene Family AT1G67510 68.169 0.0 941
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vimu9g01054 Pkinase 7.4e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01054 - - var:108346287 1337.01