Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01028 ATGGCTCCAAAAACTCTCTTTGGCCTCCTCATCTTTCTCTTTCTCCTTGTTTTTTCCACTGCTTTTTCCTTCACATTCCATGGCTTCAATCAAAGCAATATCACCCGTGAAGAGAAAGCAAATATTGACAACCAAGGTAGACTTGAGCTTACAAGAAGAGAAAACAATGCTGTTGGCCATGCATTCTACAACGAATCCATCAAAATACTTGACAAAAATGCTTCAGTCTCCCAGCCAAAGGTTTTCTCCTTCAGTACATGCTTTGTTTTCTCAATTGTGTCACCAAGCTCAGGTCCTGGTGGCTTTGGTCTTGCCTTCACCGTAGCTCCTTCAACACGATTCCCACAAGCTGAAGGTGGCCATCTTCTTGGTCTTTTCAACTCGTCCAATGATATGAACTCCTCAAATCACATCTTAGTGGTTGAGTTTGATACAGTGAATGGCTACAAAGATGCCACTGACACTGTAGGAAACCATGTTGGGGTGAACAAAAATGGTATGTCCTCAAATATATCTGAGCCTGCTGCTTATTTTGTAGATGGCAAAAAGGAAGAGTTCAACATGGAGAAGGCTGACGCTGTTTGTGTTTGGATTGAATATGATGGTGAAACAGAAATACTGAATCTCACAATATCCCCTTATTTGAAACCAAAACCAAGCAAACCTCTTATATCTGAGGCTGTTCATATCAAATCTGTCATGAAGGAGAACATGTTTTTTGGTTTCTCTGCATCAACAGGTAAGAGGAAAGCAAGTGCTCATTATATTCTGGGGTGGAGTTTTGCATTGAATGGGGTTGCCCCTCCATTAGATTATGCACTACTTCCAAAGCCACCACCAAAGGAGAAACAGTCACACTCTTTTCCTTGGATCAAGGTTATTGTTGGCATGTTGTCTGCTTTGACATTTACCTTGTTGTGCCTTTTTCTTTATGTGACACTCTATAAGAGATACATGGTATTTGAAACTCTTGAGGACTGGGAAATGGATTGTCCTCACAGGTTCAGATACAGAGATCTTCACCTAGCAACAAAGGGGTTCGTAGAGAGCCAACTAATTGGAGTTGGAGGCTTTGGTTCTGTGTACAAAGGGGTGTTACCCAGTACAGGAACTGAGGTTGCTGTTAAAAGGATCCTTAGAACTCCAGCCAAAGGAATGAGGGAATTTGCAGCTGAGATTGAAAGCTTAGGAAGATTGAGGCACAAGAATTTGGTGAACCTTCAAGGGTGGTGCAAGCACAAGAATGATCTCCTTTTGGTTTATGATTACATTCCAAATGGGAGCCTTGACTGTCTCCTATTCAGCAGAAGCTTTGTTTTGGATTGGGATCAGAGATTCAGAATTCTCAAAGGTGTAGCTGCTGGGCTGTTGTATCTGCATGAAGAATGGGAGCAAGTGGTGATCCATAGAGATGTGAAATCTAGCAATATTCTTATTGATGGGGATTTTAATGCTCATTTGGGTGACTTTGGCCTAGCAAGGCTTTATAGCCATGATAAAGTGTCACACACAACAAGTGTGGTTGGAACTATAGGGTATATTGCACCAGAGTTAACTAGGACAGGAAAAGCATCTACAAGCTCTGATGTGTACGCATTTGGGGTCCTACTTCTTGAAGTGGTTGCAGGAACAAGACCTGTTGGTTCATCAGATCAATTTTTCTTGGTGGATTGGGTTCTTGAAAATTTCCAACTGGGTCAGATTCTTGAAGTGGTTGATCCAAAGTTAGATTCAATTTATGAGGAAGAGGAAGTAGAATTGGTTCTAAAATTGGGTCTGCTATGCTCTCAAAACAAAGCTGAGTATAGACCCTCTATCGAACAAGTGACTAGGTACCTAAACTTTGATGACCCTTTTCCTGATATCTCTGACTGCAGATACTATGATTCTCAAAGTAGCACGACAAGCTTAGGATTTTTAGAAGCAATGTCTACGGGTAAGACTTCATCCTCGTACAGTTTAACCTCCATTGACAGGAGTACAATGTCCATAGAAGCTGGCAGATAG 2007 0.4155 MAPKTLFGLLIFLFLLVFSTAFSFTFHGFNQSNITREEKANIDNQGRLELTRRENNAVGHAFYNESIKILDKNASVSQPKVFSFSTCFVFSIVSPSSGPGGFGLAFTVAPSTRFPQAEGGHLLGLFNSSNDMNSSNHILVVEFDTVNGYKDATDTVGNHVGVNKNGMSSNISEPAAYFVDGKKEEFNMEKADAVCVWIEYDGETEILNLTISPYLKPKPSKPLISEAVHIKSVMKENMFFGFSASTGKRKASAHYILGWSFALNGVAPPLDYALLPKPPPKEKQSHSFPWIKVIVGMLSALTFTLLCLFLYVTLYKRYMVFETLEDWEMDCPHRFRYRDLHLATKGFVESQLIGVGGFGSVYKGVLPSTGTEVAVKRILRTPAKGMREFAAEIESLGRLRHKNLVNLQGWCKHKNDLLLVYDYIPNGSLDCLLFSRSFVLDWDQRFRILKGVAAGLLYLHEEWEQVVIHRDVKSSNILIDGDFNAHLGDFGLARLYSHDKVSHTTSVVGTIGYIAPELTRTGKASTSSDVYAFGVLLLEVVAGTRPVGSSDQFFLVDWVLENFQLGQILEVVDPKLDSIYEEEEVELVLKLGLLCSQNKAEYRPSIEQVTRYLNFDDPFPDISDCRYYDSQSSTTSLGFLEAMSTGKTSSSYSLTSIDRSTMSIEAGR 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01028 668 ProSitePatterns Serine/Threonine protein kinases active-site signature. 467 479 IPR008271 GO:0004672|GO:0006468
Vimu9g01028 668 SUPERFAMILY Concanavalin A-like lectins/glucanases 21 280 IPR013320 -
Vimu9g01028 668 Gene3D Phosphorylase Kinase; domain 1 332 423 - -
Vimu9g01028 668 CDD lectin_legume_LecRK_Arcelin_ConA 22 265 IPR001220 GO:0030246
Vimu9g01028 668 Gene3D Transferase(Phosphotransferase) domain 1 424 624 - -
Vimu9g01028 668 CDD STKc_IRAK 353 614 - -
Vimu9g01028 668 FunFam serine/threonine-protein kinase PBS1-like 319 423 - -
Vimu9g01028 668 ProSitePatterns Protein kinases ATP-binding region signature. 353 384 IPR017441 GO:0005524
Vimu9g01028 668 Pfam Protein kinase domain 348 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu9g01028 668 PANTHER - 20 615 - -
Vimu9g01028 668 SUPERFAMILY Protein kinase-like (PK-like) 330 621 IPR011009 -
Vimu9g01028 668 SMART serkin_6 347 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu9g01028 668 ProSiteProfiles Protein kinase domain profile. 347 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu9g01028 668 Gene3D - 19 268 - -
Vimu9g01028 668 FunFam L-type lectin-domain containing receptor kinase V.9 21 266 - -
Vimu9g01028 668 Pfam Legume lectin domain 23 271 IPR001220 GO:0030246
Vimu9g01028 668 FunFam L-type lectin-domain containing receptor kinase S.4 424 626 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01028 Vimu-Chr9 17108031 17111194 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g01028 24 638 Receptor kinase-like Gene Family AT5G01560 51.823 0.0 624
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vimu9g01028 Pkinase 4.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01028 - - vra:106770487 1283.47