Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01010 ATGGGAGAAAGCCGAGTCTCCCAATGTTCAAAGACAAGCCCTTCTAACATTGATGAGGAAGAGTGTGAAAGCCATGCGAATGAAGATCAAAGGAAGCAAAACAACAATGGAGGAAGCTCAAGCAACAGCACAGTGGAAGAGAGTGAGAAAAAGATTAGACCTTATGTTAGATCCAAGTTACCAAGGCTTCGATGGACACCTGATCTTCATCTTCGCTTTGTTCATGCTGTTCAACGACTTGGAGGACAAGAGAGAGCAACACCTAAACTGGTTCTTCAACTGATGAACATGAAAGGTTTGAGTATTGCCCATGTCAAGAGTCATTTGCAGATGTTTAGGAGCAAAAAGGTGGATGACCGAAATCAAGTATTTTCCGATCATACTAGTCTTGTTGAAATTGGAGACAAAAATATATATAATCTTAGCCAACTTTCCATTCTTCAAGGATACAATCCCAGTCAAAGTTCGTCCTACAGCTACAAAAACAATAACTATCCAAGTTACGGATTCGGGGATGCTTATTTTGGTAGCTACGAAAAACTTGTGCACAGACCTTTGGATTGGTTTAATGGAATGTCTCGAGCAGGTTCATCCATTTCTGGTGAACAATCAACAAGCAAAATTCGTGAACCAAAATATGAGCTTTTCTCATTTGGTGCTTATGAAAAACTATGCACAAGATTTAGCCATGTTGAACACACTCCATCAAATATTATTCAACAGAGAGCACAAAACCTGATGCCTGTAAATCCAACAACAGAATTGAAGACACTGAAAAGGAAGGCTCAAGATTCATCACTTGATTTGGATCTGTCACTGAAACTAAACACAAAGATGGATGCTGAAGGAACAAAATTGGAGGACAATGAAGTTCATAGCAACCTGTCCCTGTCGTTGTGCTCTCAATCCTCCTCTTCCAATCTCAGCAGCAGGTTAAAGGAAGCAAAAGATCGATGTGTTGAAAACGGGAAAAGGGCCAGTACTCTAGATCTGACTATATGA 1002 0.4022 MGESRVSQCSKTSPSNIDEEECESHANEDQRKQNNNGGSSSNSTVEESEKKIRPYVRSKLPRLRWTPDLHLRFVHAVQRLGGQERATPKLVLQLMNMKGLSIAHVKSHLQMFRSKKVDDRNQVFSDHTSLVEIGDKNIYNLSQLSILQGYNPSQSSSYSYKNNNYPSYGFGDAYFGSYEKLVHRPLDWFNGMSRAGSSISGEQSTSKIREPKYELFSFGAYEKLCTRFSHVEHTPSNIIQQRAQNLMPVNPTTELKTLKRKAQDSSLDLDLSLKLNTKMDAEGTKLEDNEVHSNLSLSLCSQSSSSNLSSRLKEAKDRCVENGKRASTLDLTI 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01010 333 MobiDBLite consensus disorder prediction 1 53 - -
Vimu9g01010 333 Pfam Myb-like DNA-binding domain 63 111 IPR001005 -
Vimu9g01010 333 MobiDBLite consensus disorder prediction 1 15 - -
Vimu9g01010 333 FunFam Myb family transcription factor 59 117 - -
Vimu9g01010 333 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 117 IPR017930 -
Vimu9g01010 333 MobiDBLite consensus disorder prediction 31 45 - -
Vimu9g01010 333 SUPERFAMILY Homeodomain-like 60 115 IPR009057 -
Vimu9g01010 333 NCBIfam myb-like DNA-binding domain, SHAQKYF class 61 116 IPR006447 GO:0003677
Vimu9g01010 333 MobiDBLite consensus disorder prediction 16 30 - -
Vimu9g01010 333 Gene3D - 60 117 - -
Vimu9g01010 333 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 24 280 IPR044847 GO:0000976|GO:0006355|GO:0010158
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01010 Vimu-Chr9 17000570 17002436 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g01010 27 194 G2-like Transcription Factor Family AT2G42660 40.341 1.91e-33 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vimu9g01010 Myb_DNA-binding 7.8e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01010 - - gmx:100801120 428.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g04568 6 51464438 51465988 Vimu9g01010 9 17000570 17002436 PCT