Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01009 ATGCCCTCTAGTTCATGGTTAACTTCTAAGTGGCCAATTAATTCTATAACGCACAAGCCTCGCACCCTCTTCGACTGCATCGCCGACGTCCCCCTGCCGGAGTCCCACACCACCTCCCTCACCAAGCAGTTCCTCGAAGCCTTCACCCACTACCAAGCCCTCGGCCTAGCACACGGAGACATCAAACCCAAAAACCTCTTGTTTGACGAAGCCAACATCCTTAAACTCTCCGACTTCGACTCTGCAGAGTGGTTCGGTGAGGGCAGGACCATGCGCGACGTGGTGAGCACCCCTTATTACGTGGCTCCTGAAGTGATAATGGGGAGAGACTACGACGAGAAAGTTGATATTTGGAGTTGTGGGGTTATTCTTTACACAATGTTGAGTGGCATTCCACCCTTCTATGGAGATTCTACAGTAGAAATTTTCGAAGTTGTTTTAATGGCTAATCTTAGGATTCCTTCCACAATTTTTAGGTCTGCGTCTGTTCAGGCTAAGGATCTTCTTAGGAAGATGATCTGTAGAGATCCCTCTAGATGTATATTTGCACATCATGCATTGAGACATCCATGGATTTTGAGTACTGCTCATCTTTCTTGA 600 0.4733 MPSSSWLTSKWPINSITHKPRTLFDCIADVPLPESHTTSLTKQFLEAFTHYQALGLAHGDIKPKNLLFDEANILKLSDFDSAEWFGEGRTMRDVVSTPYYVAPEVIMGRDYDEKVDIWSCGVILYTMLSGIPPFYGDSTVEIFEVVLMANLRIPSTIFRSASVQAKDLLRKMICRDPSRCIFAHHALRHPWILSTAHLS 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01009 199 PANTHER SERINE/THREONINE-PROTEIN KINASE 22 192 - -
Vimu9g01009 199 SMART serkin_6 15 192 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu9g01009 199 Pfam Protein kinase domain 22 192 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu9g01009 199 Gene3D Transferase(Phosphotransferase) domain 1 21 198 - -
Vimu9g01009 199 ProSiteProfiles Protein kinase domain profile. 1 192 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu9g01009 199 ProSitePatterns Serine/Threonine protein kinases active-site signature. 56 68 IPR008271 GO:0004672|GO:0006468
Vimu9g01009 199 SUPERFAMILY Protein kinase-like (PK-like) 21 194 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01009 Vimu-Chr9 16967630 16970835 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g01009 23 199 EF-hand Containing Proteins AT1G50700 38.674 6.29e-38 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vimu9g01009 Pkinase 3.4e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01009 - K08794 gmx:548089 247.669