Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00996 TCTATAAAACAACGTGTTAAAAGTGACAAAGTTCCCTACCAAATCCAAGTCAAGTTCCACTACCTCTCACCTCACCACTGCAACACCCTTGTAGCAGAAACAATGGATTACACTCATCCAGCTTCATCTGATGCAGCATCCTCTTCAAAGACAAAAAGAAGCAAGGAGAAAAAGGGTGCTAAGAAATGCAAAGGTGTGAGGCTCTCCACCGATCCTCAGAGCGTGGCAGCAAGAGAACGAAGGCACAGAATCAGTGACAGATTCAAGATATTGCAGAGCATGGTCCCTGGTGGAAGCAAGATGGACACAGTGTCCATGTTGGAGGAAGCCATTCAGTATGTGAAGTACCTCAAAACTCAGATTTGGCTCCACCAAACCATGATCAATTTCTTAGATGATAACGACTCAATCTCCCCTATGTACCTTACTGATTTCTACTTCCCTTCTGACCCTTCTGAACAGTTCATTTTCCCTCAGCAAAATCCACCACTTGATCATAACATGCACAACTTTCCTCATCTGCCACCACCACAATGCACCTTCCATGGTGAAGACACCACCTACTTCGATGCCTCTTTCTAA 582 0.4467 SIKQRVKSDKVPYQIQVKFHYLSPHHCNTLVAETMDYTHPASSDAASSSKTKRSKEKKGAKKCKGVRLSTDPQSVAARERRHRISDRFKILQSMVPGGSKMDTVSMLEEAIQYVKYLKTQIWLHQTMINFLDDNDSISPMYLTDFYFPSDPSEQFIFPQQNPPLDHNMHNFPHLPPPQCTFHGEDTTYFDASF 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00996 193 MobiDBLite consensus disorder prediction 40 74 - -
Vimu9g00996 193 FunFam Transcription factor LAX PANICLE 71 134 - -
Vimu9g00996 193 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 68 117 IPR011598 GO:0046983
Vimu9g00996 193 Pfam Helix-loop-helix DNA-binding domain 78 118 IPR011598 GO:0046983
Vimu9g00996 193 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 73 129 IPR036638 GO:0046983
Vimu9g00996 193 CDD bHLH_AtIND_like 69 128 - -
Vimu9g00996 193 SMART finulus 74 123 IPR011598 GO:0046983
Vimu9g00996 193 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 38 174 IPR045843 GO:0003700|GO:0006355
Vimu9g00996 193 Gene3D - 72 126 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00996 Vimu-Chr9 16720419 16721147 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00996 62 162 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 44.340 7.21e-22 89.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu9g00996 HLH 1.4e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00996 - - pvu:PHAVU_010G073400g 264.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g04562 6 51392073 51392899 Vimu9g00996 9 16720419 16721147 PCT