Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00990 ACCGAATTGATCTTGGTAAATGATAAGATTGTTAATGGCAATAATGTTGAGAAGCCAATCCCTGGCTCTGAAGAAGTAAGCGATGAAAGTGTTGTGCCGAAAAACGGTATCAATAGTGAGGATATTGTAGGGCAACCTGCTTCAGAAGGAGAACTAAAAGAAGCATCTCATGCAACACGAGTGGTAAGGACATCAGAGGATGGTTATAATTGGAGAAAATATGGACAAAAACAGGTAAAAGGTAGTGAGTATCCCAGAAGCTATTATAAATGTACACAACCTAATTTTCTGGTCAAGAAAAAGGTGGAACGATCCCATGATGGTCAAATTACAGAAATCATCTACAAGGGTAATCATAACCATGTAAAACCACACTCTAGTCATAGAGGATCTGCACTTTCTACAGATGAGGTTTCAGACATGGCTGAAGAAGGTGCATTGGCTAAAGTTGATGGTGGGTTCATGTGGAGAAATATTCAGTCAGGAATAAAAGATTCAAAATACAGTTTAGATTGGAAGGCTGATGGTCAGGAAAGGACATCACCAACTTCTGGTGTGACTGAGATTTTAGATCTTATATCAACCAGAAAAGCTAAATCTCTATCCATGTTTGAATCGGAGGAGACTCCAGAGCTTTCTTCTACACTTGCTAGTCATGATATGGAAGAAGATGGAGCCACTCAAGCAATTGTTGAAGATGAAGTTGAGAATGATGAATCGGAACCTAAAAGAAGAAAGAAAGAGAACTATGCAGCTGAATCAAATTTGCCCCCTAGGTCTGTTCGTGAGCCAAGAGTGGTAGTCCAAATTGAGAGTGATGTGGACATACTTGATGATGGTTATCGCTGGCGTAAGTATGGACAGAAGGTTGTCAAAGGAAATCCAAATCCTAGGTAA 897 0.398 TELILVNDKIVNGNNVEKPIPGSEEVSDESVVPKNGINSEDIVGQPASEGELKEASHATRVVRTSEDGYNWRKYGQKQVKGSEYPRSYYKCTQPNFLVKKKVERSHDGQITEIIYKGNHNHVKPHSSHRGSALSTDEVSDMAEEGALAKVDGGFMWRNIQSGIKDSKYSLDWKADGQERTSPTSGVTEILDLISTRKAKSLSMFESEETPELSSTLASHDMEEDGATQAIVEDEVENDESEPKRRKKENYAAESNLPPRSVREPRVVVQIESDVDILDDGYRWRKYGQKVVKGNPNPR 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00990 298 ProSiteProfiles WRKY domain profile. 60 124 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu9g00990 298 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 49 298 IPR044810 GO:0003700
Vimu9g00990 298 ProSiteProfiles WRKY domain profile. 272 298 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu9g00990 298 SMART WRKY_cls 65 123 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu9g00990 298 SUPERFAMILY WRKY DNA-binding domain 270 298 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu9g00990 298 Gene3D WRKY domain 264 298 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu9g00990 298 SUPERFAMILY WRKY DNA-binding domain 62 124 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu9g00990 298 Pfam WRKY DNA -binding domain 278 298 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu9g00990 298 Pfam WRKY DNA -binding domain 66 121 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu9g00990 298 Gene3D WRKY domain 52 125 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu9g00990 298 MobiDBLite consensus disorder prediction 237 252 - -
Vimu9g00990 298 MobiDBLite consensus disorder prediction 16 57 - -
Vimu9g00990 298 MobiDBLite consensus disorder prediction 201 265 - -
Vimu9g00990 298 FunFam WRKY transcription factor 53 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00990 Vimu-Chr9 16602035 16603017 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00990 65 298 WRKY Transcription Factor Family AT5G56270 47.561 9.31e-56 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vimu9g00990 WRKY 2.9e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00990 K18835 - gmx:100800211 460.685