Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00988 ATGGACATGATGGACGTGGATGAAACTTCTGCACCGAGAGATGGCAAGCCCGTTTTGGTGATCCTGGTAGGAGCACCCGGGAGTGGCAAATCCACCTTTGGCGAAGATGTAATGGGTTCATCTACTCGTCACTGGGTTCGGGTTTGCCAGTTGCAACTACGCTTCAAAGCCATTAAAACAGGCTTGTGGGTGTTGGATACTATTGGAAATGGAAAAGCAGGGACTAAAGCTCAGTGCCTAAGCAGTGCAACTAGTGCATTGAAGGATGGAAAGAGTGTATTTATTGATAGGTGCAATCTTGACAGAGAACAGCGGTCAGAATTCATAAAGCTTGGTGGTGGACTCCAAATAGACGTCCATGCAGTTGTACTTGATCTTCCTGCGAAGCTTTGTATTTCTCGATCAGTCAAACGAACTGGGCATGAAGGAAATTTGCAGGGTGGAAGAGCGGCTGCAGTTGTGAATAGAATGCTTCAACATAAAGAGCTTCCCAAATTAAGTGAAGGCTTTAACCGGATAACATTTTGTCTGAACGAGAATGACGTAAAAAATGCGATTAATACATACAGCTCACTTGGGCCACTGGATAATCTTCCACATGGCTGCTTTGGCCAGAAGAATACGGATTCCAAAATTCAAGTCGGCATAATGAAGTTCCTAAAAAGAGCAGAGGTCCCACTTGCTGCTGCATCCACAACGAGTGGCACTGAAGAGCCTACTTCCCAGACTCCGAGAAATAATTTGTACTGCAAAGATAAGGAAGCACTTTCCTCAATTTCAGATACTGACAACTTAGAGACAAAGGAAGTAGAAACGCAAGAAGTTGGTTCTGCTGGTTCGCATGCCAATCAAGTTTGTCCGGATGATATTCCAACTCTGGCATTTCCCTCTATTTCAACATCTGATTTCCAATTCAATCTTGAGAAGGCAGCTGATATTATCGTTGAGCAGGTTGCAGAGTTCTTAAATAAGTTTAGGAATGCCAGACTTGTTCTTGTTGACTTATCTCATAAGTCAAAGATTTTGTCCTTAGTTAAAGCCAGAATTGCAGAAAAAAACATGGACACCCAAAAGTTTTTTACCCATGTTGGGGACATTACTCATCTTTATTCCAGGGGAGGTTTGCGATGCAATGCCATTGCTAATGCTGCCAACTGGAGGTTGAAACCTGGAGGTGGAGGTGTTAATGCAGCAATTTTTAATGCTGCAGGTCCAGAACTGGAGTCTGCAACAAAAGATAAAGTAAAATCTCTGTCACCTGGGAATGCTGCTCTTGTCCCTCTGCCTTCATCTTCTCCTTTGTTCACCAGAGAGGGTGTAACCCATGTAATACATGTTCTTGGACCTAATATGAACCCACAAAGACCAAATTATCTAAATAATGATTATAATAAAGGCTGCAAAATTCTCCAAGATGCTTATACTTCACTCTTTGATGGTTTTGCGTCTATTTTGCGGAACCACCCAAGGATACCAGAGGGAAAAAGTGAAAAGCTTGAAAGGAAGTCATTGGAGTTGCCGGTTCAGTCTGATTGTTCTTCCAGAAAATATTTTACAGGTACTGATCAAAAGAGTAAGAGAAGTGATGATCATGGATCAGAGAAAAGCAAGAAATGCAAGGGAACTCAGGATGACATAGGATTGCCCTTTACTGATTCTAAGGGTGAAAAGGTAGATTCAAAGCATAGAAGAATAGAGAGGAGCAGGAGTAAGGCTTGGGGATCATGGGCTCAAGCTCTTCACCAAATAGCTATGCATCCTGAAAAGCATAAGGGTGATTTGCTTGAAATTTCCGATGATGTTGTTGTATTGAATGATATCTATCCAAAGGCGCAGAAGCATGTTCTGGTGTTGGCACGAACTGGGGGTCTTGACTGCCTCGCTGATGTCCAAAAGGAGCACCTTCAGTTATTGAACATGATGCACGATGTGGGTTTAAAGTGGGCTGAGAAGTTCTTAAGCGATAATGCTTCTCTGGTATTTCGACTTGGGTATCACTCGGCACCATCGATGCGACAACTACATTTACATGTTATTAGCCAGGACTTTGAATCAACACAATTAAAGAATAAGAAGCACTGGAACTCATTTAACACTGCTTTCTTTCGTGACTCGGTTGATGTAATAGATGAGGTCTCTAGTGATGGGAAGGCAACGTTGAAAGATGATGACAAGCTACTCTCTATGGAGTTGAGGTGCCACAGATGTAGAAGTGCCCATCCAAACATACCCCGTTTAAAATCTCATATAAGCAGCTGCCAATCCCCATTTCCTGCATACCTACTTCAGAATGGACGTTTAGTGCATGCTCCGGGGGAACCTCGCAACAGTGTACAGTAG 2340 0.4295 MDMMDVDETSAPRDGKPVLVILVGAPGSGKSTFGEDVMGSSTRHWVRVCQLQLRFKAIKTGLWVLDTIGNGKAGTKAQCLSSATSALKDGKSVFIDRCNLDREQRSEFIKLGGGLQIDVHAVVLDLPAKLCISRSVKRTGHEGNLQGGRAAAVVNRMLQHKELPKLSEGFNRITFCLNENDVKNAINTYSSLGPLDNLPHGCFGQKNTDSKIQVGIMKFLKRAEVPLAAASTTSGTEEPTSQTPRNNLYCKDKEALSSISDTDNLETKEVETQEVGSAGSHANQVCPDDIPTLAFPSISTSDFQFNLEKAADIIVEQVAEFLNKFRNARLVLVDLSHKSKILSLVKARIAEKNMDTQKFFTHVGDITHLYSRGGLRCNAIANAANWRLKPGGGGVNAAIFNAAGPELESATKDKVKSLSPGNAALVPLPSSSPLFTREGVTHVIHVLGPNMNPQRPNYLNNDYNKGCKILQDAYTSLFDGFASILRNHPRIPEGKSEKLERKSLELPVQSDCSSRKYFTGTDQKSKRSDDHGSEKSKKCKGTQDDIGLPFTDSKGEKVDSKHRRIERSRSKAWGSWAQALHQIAMHPEKHKGDLLEISDDVVVLNDIYPKAQKHVLVLARTGGLDCLADVQKEHLQLLNMMHDVGLKWAEKFLSDNASLVFRLGYHSAPSMRQLHLHVISQDFESTQLKNKKHWNSFNTAFFRDSVDVIDEVSSDGKATLKDDDKLLSMELRCHRCRSAHPNIPRLKSHISSCQSPFPAYLLQNGRLVHAPGEPRNSVQ 779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00988 779 Pfam AAA domain 19 159 - -
Vimu9g00988 779 ProSitePatterns HIT domain signature. 662 680 IPR019808 -
Vimu9g00988 779 Pfam Scavenger mRNA decapping enzyme C-term binding 583 693 - -
Vimu9g00988 779 Pfam C2HE / C2H2 / C2HC zinc-binding finger 698 751 IPR032566 -
Vimu9g00988 779 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 175 IPR027417 -
Vimu9g00988 779 MobiDBLite consensus disorder prediction 520 542 - -
Vimu9g00988 779 SUPERFAMILY Macro domain-like 339 478 IPR043472 -
Vimu9g00988 779 FunFam Transcription factor bHLH140 7 191 - -
Vimu9g00988 779 SUPERFAMILY Macro domain-like 280 326 IPR043472 -
Vimu9g00988 779 SUPERFAMILY HIT-like 570 737 IPR036265 -
Vimu9g00988 779 SMART YBR022w_8 358 500 IPR002589 -
Vimu9g00988 779 MobiDBLite consensus disorder prediction 550 564 - -
Vimu9g00988 779 MobiDBLite consensus disorder prediction 515 564 - -
Vimu9g00988 779 FunFam Transcription factor bHLH140 339 486 - -
Vimu9g00988 779 PANTHER APRATAXIN-RELATED 293 753 - -
Vimu9g00988 779 Gene3D - 575 756 IPR036265 -
Vimu9g00988 779 Gene3D - 3 191 IPR027417 -
Vimu9g00988 779 Pfam Macro domain 381 464 IPR002589 -
Vimu9g00988 779 Gene3D Leucine Aminopeptidase, subunit E, domain 1 338 485 IPR043472 -
Vimu9g00988 779 ProSiteProfiles Macro domain profile. 346 584 IPR002589 -
Vimu9g00988 779 Gene3D Leucine Aminopeptidase, subunit E, domain 1 258 337 IPR043472 -
Vimu9g00988 779 FunFam aprataxin isoform X2 574 754 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00988 15 768 C2H2 Transcription Factor Family AT5G01310 58.223 0.0 854
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00988 K10863 - gmx:100786762 1290.79