Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00986 ATGGCTGCAGAAACTTCATCCCTTACACAATCCCAGTTCCTCAGTAACAGAGAGACCTTAGTTTCCCCCGGTGGAATGTTTGAACTCGGTTTCTTCAACCTAGGACATCCCAACAAAACCTACCTCGGGATCTGGTACAAGAATATCCCTCTACAAAACATAGTATGGGTTGCAAACAGTGCCATCTCAATCAACGACTCTTCAACCATCTTGAAACTAAACAGCTCTGGAAATTTGTTCCTCACACAAAACAACACGGTTGTTTGGTGCACAAGTTCTGAAGAAAAGGCGCAGAATCCAGTAGCAGAGCTCTTGGACTCTGGCAATCTTGTGATAAGAGATGAAAATGAAGCGGAGGCAGAAGCATATCTGTGGCAAAGCTTTGATCATCCATCTAATACAATGCTGCCAGGAATGAAGCTTGGATGGGACCTCAAAAGAAATTTCAGTGTTTTCCTTAAAGCTTGGAAGAGTTATGATGATCCGACACCTGGAGACTTATCTTGGGGCATTGTTCTTCATCCTTATCCTGAGATGTATATGATGAAGGGACCAAAAAAGCACTATAGACATGGGCCGTGGAATGGTTTGCGTTTCAGTGGAAGGCCACTTAATACCATTTACCATTATGAATTTGTCTCTAACCAGGAAGAGGTTTATTTCAGATGGAGCCTCAAGAAAACTAGTTTAGTAACAAAAGTGGAACTAAATCAAACTTCTCAAGAACATCAATATTATGTATGGTCAGAGAAAACATGGACTTTGTATTCAACAATGCCAAAAGATTACTGTGATCATTATAGAGTTTGTGGAGCCAATACTTATTGCACCACTTCTGCGTCAGCAATGTGTGATTGTTTAAAAGGGTTCAAGCCTAAGTCGCCTGAGAAGTGGAACTCAGTGGAATGGTCCCAAGGATGTGTCCTCCAACATCCACTTAACTGTGAAGACAAATTGGGTGATGGTTTTTTCTTCATGGATGGTTTAAAAGTGCCGGATACTGAATATACGTTTGTGGATGAGACTATTGATTTAAAACAATGCAGAGCCAAGTGCTTGAATAATTGTTCCTGCATGGCATATACCAATTCAAATATAAGTGGAGCTGGCAGTGGCTGTGTCTTGTGGTTGGGTGATTTATTTGACATCAAACTCTATTCAAATCCAGAAATGGGGCAGCGCCTATATCTAAGGTTCAATCCTACAAAATTAGATAAATCAAAGACAAAAGAGAACATTGAAAGACAGCTACGTGTTCTGGATGTGACTTTGTTTGATCTTTCTTCAATCAGAACCGCCACTAACAATTTTTCATTGAACAATAAGATTGGACAGGGTGGTTTTGGACCTGTATATAAGGGAAAATTAGTGGATGATCGAGAAATTGCTGTCAAGAGACTTTCACAAAGCTCTGGACAAGGAATCACTGAGTTCATGACAGAAGTGAATGTGATAGCAAAGCTTCAACACCGAAATCTTGTAAAGCTCCTTGGTTGTTGCTTTCAAGGAAAAGAAAAGTTACTAGTTTATGAATACCTGATCAATGGCAGCCTAGACATCTTCCTGTTTGGTATGTAA 1578 0.4018 MAAETSSLTQSQFLSNRETLVSPGGMFELGFFNLGHPNKTYLGIWYKNIPLQNIVWVANSAISINDSSTILKLNSSGNLFLTQNNTVVWCTSSEEKAQNPVAELLDSGNLVIRDENEAEAEAYLWQSFDHPSNTMLPGMKLGWDLKRNFSVFLKAWKSYDDPTPGDLSWGIVLHPYPEMYMMKGPKKHYRHGPWNGLRFSGRPLNTIYHYEFVSNQEEVYFRWSLKKTSLVTKVELNQTSQEHQYYVWSEKTWTLYSTMPKDYCDHYRVCGANTYCTTSASAMCDCLKGFKPKSPEKWNSVEWSQGCVLQHPLNCEDKLGDGFFFMDGLKVPDTEYTFVDETIDLKQCRAKCLNNCSCMAYTNSNISGAGSGCVLWLGDLFDIKLYSNPEMGQRLYLRFNPTKLDKSKTKENIERQLRVLDVTLFDLSSIRTATNNFSLNNKIGQGGFGPVYKGKLVDDREIAVKRLSQSSGQGITEFMTEVNVIAKLQHRNLVKLLGCCFQGKEKLLVYEYLINGSLDIFLFGM 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00986 525 Pfam D-mannose binding lectin 54 157 IPR001480 -
Vimu9g00986 525 ProSiteProfiles PAN/Apple domain profile. 315 400 IPR003609 -
Vimu9g00986 525 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 1 128 - -
Vimu9g00986 525 Pfam S-locus glycoprotein domain 189 294 IPR000858 GO:0048544
Vimu9g00986 525 SMART blect_4 11 131 IPR001480 -
Vimu9g00986 525 Gene3D - 1 129 IPR036426 -
Vimu9g00986 525 SUPERFAMILY alpha-D-mannose-specific plant lectins 54 162 IPR036426 -
Vimu9g00986 525 CDD B_lectin 11 131 IPR001480 -
Vimu9g00986 525 CDD PAN_AP_plant 311 398 - -
Vimu9g00986 525 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 7 522 - -
Vimu9g00986 525 Gene3D Phosphorylase Kinase; domain 1 399 512 - -
Vimu9g00986 525 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 401 512 - -
Vimu9g00986 525 Pfam Protein tyrosine and serine/threonine kinase 438 522 IPR001245 GO:0004672|GO:0006468
Vimu9g00986 525 Pfam PAN-like domain 317 383 IPR003609 -
Vimu9g00986 525 ProSiteProfiles Protein kinase domain profile. 437 525 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu9g00986 525 SUPERFAMILY Protein kinase-like (PK-like) 413 524 IPR011009 -
Vimu9g00986 525 SMART ntp_6 318 399 IPR003609 -
Vimu9g00986 525 ProSiteProfiles Bulb-type lectin domain profile. 5 125 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00986 Vimu-Chr9 16574097 16576493 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00986 425 523 Receptor kinase-like Gene Family AT4G23230 66.667 6.57e-33 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vimu9g00986 S_locus_glycop 1.2e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00986 - - gmx:100796821 826.624