Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00967 ATGATGATCGGGTATGAAGAGCAGAATGAGTGGTATTTCTTCATCCATAAAGATAAAAAGTATGCAACAAGGACAAGAACTAACAGAGCTACCATGACGGGGTTTTGGAAGGCTACAGGAAGAGACAAAGCAGTGTATGACAAGGCAAAACTTATTGGGATGAGAAAAACCCTTGTTTTCAACAAAGGAAGAGCCCCCAATGGACAAAAGTCTGATTGGATCATGCACGAGTATAGACTCGAATCCGACGAGAATGGACCTCCTCAGGTAAGCATATATATTACTGCATACATACTATTAATCTCTAGTGCATAA 315 0.4032 MMIGYEEQNEWYFFIHKDKKYATRTRTNRATMTGFWKATGRDKAVYDKAKLIGMRKTLVFNKGRAPNGQKSDWIMHEYRLESDENGPPQVSIYITAYILLISSA 104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00967 104 Pfam No apical meristem (NAM) protein 7 80 IPR003441 GO:0003677|GO:0006355
Vimu9g00967 104 SUPERFAMILY NAC domain 6 86 IPR036093 GO:0003677|GO:0006355
Vimu9g00967 104 Gene3D NAC domain 2 94 IPR036093 GO:0003677|GO:0006355
Vimu9g00967 104 ProSiteProfiles NAC domain profile. 1 101 IPR003441 GO:0003677|GO:0006355
Vimu9g00967 104 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00967 Vimu-Chr9 16225909 16226240 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00967 3 96 NAC Transcription Factor Family AT2G18060 84.043 1.35e-54 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vimu9g00967 NAM 8.4e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00967 - - cpap:110822490 177.178