Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00958 ATGTACAAGGGTAGATTAGGAGGAAAAGCTCATCTTGGATATGTTGAAACTGACCCTTCTGGTCGATATGGTCGTTTCAGGGACATTCTTGGGAAAGGAGCAGTGAAGGTTGTGTATAGGGCATTTGATGAAGTCCTTGGAATAGAGGTGGCTTGGAACCAAGTTAACCTTGGCGATGTCTTTCATTCACCAGACCTACTTCAACGTCTTTACTCAGAGGTTCATCTCCTCAAGAACTTGGAACATGACTCCATCATGACCTTCCATGATTCTTGGATTGATGTCAATTATAGAACCTTCAACTTCATCACTGAATTGTTCACCTCTGGCACCCTAAGAGAGTACAGAAAGAAGTATCAGAGAGTAGATATCAGAGCAGTGAAGAACTGGGCACGCCAGATTTTAACTGGTTTGGAGTATTTGCATAGCCATGATCCTCCAGTGATACATAGAGACCTCAAGTGTGACAATATCTTCATCAATGGCCATCTGGGGCAGGTCAAGATTGGTGATTTGGGCCTTGCAGCCATTCTTCGTGGCTCCCAACATGCACACAGTGTCATAGGCAATTTCACTTTCTCTTTTAGTTGGTACTTAAATAATCAGTTATTAAATTCAGGTACACCAGAATTTATGGCACCGGAATTGTATGAAGAGGAGTACAATGAGCTGGTTGACATATACTCCTTTGGGATGTGCATGATAGAAATGTTTACTTCTGAGTTCCCATACAGCGAGTGCTCCAACCCAGCTCAAATATACAAGAAAGTTACTTCAGGGAAGCTGCCAGAAGCCTTTTACAGAATCCATGACTTGGAAGCTCAGAAGTTTGTGGGAAAATGTTTGGCAAATGTCTCAGAGAGGTTGTCAGCAAAGGAGCTCTTGTTGGACTCATTTTTAGCCGAGGACCAACTAGACTCTCCACTCTCTAGCCCAATATTACCCAGAAAACAAACCCCCACACTCAATTTCACTGCACCACTGGCCAAAGGGCTACCACCAATGAGTGACCAAATAAAAGACACACACATGACCATCACAGGATCAATCAATGAAGAGGATGACACAATTTTCCTTAAAGTACAAATCTCTAACAAAAGTGGGGAAAAGAGGAATATATTCTTTCCATTTGACACCATAAACGACACTGCAATTGATGTGGCAGTGGAGATGGTTAAAGAACTTGAAATTAGTGACTTGGAACCATTAGAGATTGCTGAAATGATTGAGGAAGAGATATCGGCTTTAGTCCCAACATGGAGGGACTTGGGCACTTCTAAGTATCAAAGACAACATAGTTTTAGCTATGAAGATGAGTATGATATGAGTAACCACCACTCATACTTCTCACCATCTTCTCGCTCTTCCTCTCATGGTTCTTCCCACAAGCATAATTCCCACCTCTGTGGGAACCATTACCCTTTTGCTCAAGATTGGCCTCAGGATGAACTGTTTATGAATGATGATTCGAGCTCTCAAAGCTCAATGAACTCCTTCAAGTACTGTGACCCTGGCAATGAAGATGGGCATGATCAAACTGCATTGCTAGGAGCAGAAGCCCTTTGCTACTCTCCAAAAGGCAATGAAAAGTGCACAAGATTCTGTCCTCGAGAAGAAGTGATGGATGCTGATTGCACCAAACAGTTTTGCAACATGAAAATTGATTCTCACAGGTATCATGGAGTCCAGAGGCTAACCAGGATTCGTTCCTTTGTGGATCTAAGGAGACAACAACTGCAACGATCACTGATGGAAGAGATTCACAAGAGGAGAATCTTCAAGACGGTCGGTGCCATTGAGAACATTGGTTTTCAAAATCCAGAGGGAGCTGGGAGCTTTTTATTTTAA 1848 0.4264 MYKGRLGGKAHLGYVETDPSGRYGRFRDILGKGAVKVVYRAFDEVLGIEVAWNQVNLGDVFHSPDLLQRLYSEVHLLKNLEHDSIMTFHDSWIDVNYRTFNFITELFTSGTLREYRKKYQRVDIRAVKNWARQILTGLEYLHSHDPPVIHRDLKCDNIFINGHLGQVKIGDLGLAAILRGSQHAHSVIGNFTFSFSWYLNNQLLNSGTPEFMAPELYEEEYNELVDIYSFGMCMIEMFTSEFPYSECSNPAQIYKKVTSGKLPEAFYRIHDLEAQKFVGKCLANVSERLSAKELLLDSFLAEDQLDSPLSSPILPRKQTPTLNFTAPLAKGLPPMSDQIKDTHMTITGSINEEDDTIFLKVQISNKSGEKRNIFFPFDTINDTAIDVAVEMVKELEISDLEPLEIAEMIEEEISALVPTWRDLGTSKYQRQHSFSYEDEYDMSNHHSYFSPSSRSSSHGSSHKHNSHLCGNHYPFAQDWPQDELFMNDDSSSQSSMNSFKYCDPGNEDGHDQTALLGAEALCYSPKGNEKCTRFCPREEVMDADCTKQFCNMKIDSHRYHGVQRLTRIRSFVDLRRQQLQRSLMEEIHKRRIFKTVGAIENIGFQNPEGAGSFLF 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00958 615 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 14 495 - -
Vimu9g00958 615 Gene3D Transferase(Phosphotransferase) domain 1 107 306 - -
Vimu9g00958 615 Gene3D Phosphorylase Kinase; domain 1 9 105 - -
Vimu9g00958 615 FunFam Probable serine/threonine-protein kinase WNK1 9 105 - -
Vimu9g00958 615 ProSitePatterns Serine/Threonine protein kinases active-site signature. 148 160 IPR008271 GO:0004672|GO:0006468
Vimu9g00958 615 SUPERFAMILY Protein kinase-like (PK-like) 26 336 IPR011009 -
Vimu9g00958 615 Pfam Protein kinase domain 28 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu9g00958 615 ProSiteProfiles Protein kinase domain profile. 24 300 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu9g00958 615 FunFam probable serine/threonine-protein kinase WNK9 107 305 - -
Vimu9g00958 615 SMART serkin_6 24 300 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00958 Vimu-Chr9 16025500 16029527 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00958 12 591 MAP Kinase Kinase Kinase AT3G51630 55.385 0.0 580
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Vimu9g00958 Pkinase 3.1e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00958 K08867 - gmx:100816187 1019.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g00166 6 2231112 2234093 Vimu9g00958 9 16025500 16029527 PCT