Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00956 ATGGGGAATCACAGGTTTAGATTATCAGATATGATTCCGAATGCTTGGTTTTACAAGCTCAGGGATATGGGCAAGGGAAGAAAGCAAAACACCACACTCTCTGGGAAGAAGAAGCAAACTTCATCCACTTCAACCACACATTCATCAAAACCAAACCAACCCCTCCACCAATACAACAACAACAACCCCAGAAAGTCATACTACATCACAAGAGACCTCAAAACCTCACCCTCAAACACACCGAAATTTTCCCCTCCCAGAAAATCAACCAAACAAAGAACCAAAACAAGAGCTCCAAGAACCACAAAGTTTGCTTCCTCAGGTTGTAGCTGTCGCAGCACCCTTGAATCCATGTGGACCAAATCAGATTCACCGCAGGAACACTCTTCCTCATCCCCATTTGACTCCTCACCCGAATCAGAGTCCCCAGAATTCAGAACAGACCGTGTTCTCCCGTGTTCTTCATCGTTCGATGAAATGGTTTCCTTGTCAACCACCTCTTGCGCCTCTTGCAGGCTTAACACAAACAAAAACAACCACCCCACCAACGACATCATCATCGACGTCGACAAAAACTCCATACCAAGAAAGGATAACAAGCTTGATGGCTACTACAGTTACAACAACAGCCGCAACAACGACTATGATGAAACCTTCTCAGAACTTGAGCTTCCTCCGATCATAACCAAGCCACCCAAGTTGTTAAAGAAAAGAGAACTCAAACAAGGGTCGTTGAAGGTGAGAGTTGTGAAGGAAGAGTCTGCAATGAAGGAACAGAGGAACAGTGGTTCTGTGAGGCGGTTCTCTGTGAATTCTCCGGGGATGAGGTTGAGGGTCCACTCGCCCAAAATCGCCGGATGGAAGGGACGGAAAAGTGTGTCGTTGACGGCGAGTTCCGGCTCCCGGAGAAGCCTCTCGGAGAGTTTTGCAGTTGTGAAGTCTTCTTTTGACCCACAGAAGGATTTCAGGGAGTCCATGGTGGAGATGATTGTGGAGAACAACATAAGGGCATCGAAGGACTTGGAGGATCTACTTGCTTGTTACCTTTCTCTCAATTCAGATCAGTATCACGACCTCATCATCAAAGTTTTCAAGCAAATTTGGTTTGATTTGACTCAACCAAGGTAA 1128 0.461 MGNHRFRLSDMIPNAWFYKLRDMGKGRKQNTTLSGKKKQTSSTSTTHSSKPNQPLHQYNNNNPRKSYYITRDLKTSPSNTPKFSPPRKSTKQRTKTRAPRTTKFASSGCSCRSTLESMWTKSDSPQEHSSSSPFDSSPESESPEFRTDRVLPCSSSFDEMVSLSTTSCASCRLNTNKNNHPTNDIIIDVDKNSIPRKDNKLDGYYSYNNSRNNDYDETFSELELPPIITKPPKLLKKRELKQGSLKVRVVKEESAMKEQRNSGSVRRFSVNSPGMRLRVHSPKIAGWKGRKSVSLTASSGSRRSLSESFAVVKSSFDPQKDFRESMVEMIVENNIRASKDLEDLLACYLSLNSDQYHDLIIKVFKQIWFDLTQPR 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00956 375 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 51 372 IPR038933 GO:0045892
Vimu9g00956 375 ProSiteProfiles OVATE domain profile. 311 370 IPR006458 -
Vimu9g00956 375 MobiDBLite consensus disorder prediction 99 140 - -
Vimu9g00956 375 Pfam DNA-binding domain 1 42 IPR025830 GO:0003677
Vimu9g00956 375 NCBIfam uncharacterized plant-specific domain TIGR01568 309 372 IPR006458 -
Vimu9g00956 375 MobiDBLite consensus disorder prediction 26 147 - -
Vimu9g00956 375 MobiDBLite consensus disorder prediction 27 87 - -
Vimu9g00956 375 Pfam Transcriptional repressor, ovate 315 371 IPR006458 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00956 Vimu-Chr9 15915541 15916668 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Vimu9g00956 Ovate 1.3e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00956 - - gmx:100803805 518.85