Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00934 ATGCAGCTAGTTGAATCTCCTAGTTTTAAATTTCCATTAGTTGAGTTGCCAACTGATGTAGAACCTAAATTGGCTCTTCTATTGAACACGTATCAATATGTGTTTGAGATGCCTTCTTTTCTGCCACCAAACTGGTCCCATGATGATTCTATTCCCTTGATAGAAGGATCTCAACCAGTTAAAGTTAAGCCCTATAGATATTTGCACAGTATGTTGGAAGAAGGCATCATACAACCGACTAAGAGTCCTTTCTTTTCTCCAATAATCTTTGTAAAGAAAAAGGATGGATCATTGATAGTATGTACTAACTACAGGGCATTAAATGTTGTTACGATGAAGGACATTTTTCCAATTCCAACAGTGGATGAATTATTTCGACCTCAAGAAGCTCGCGTTTTGTTTATCGAAAGTCGGAGCAGTTCTCTTCAAGTTGGCAAGGAGAAGCTCGCGTTTCCTTTTTCGAAAGTCGGAGCGGTTCCCTTCGAGTTGGCAAAGTGTTCGCTTCCGGTTCGTTTGTCGAAGGAAGCACCCTTCCGGTTCGATCATTTAAATAATTTAGAATATGTGTTGAAGACTCTACAACACCAAAAACTTTATGCTAGACTCTCTACATGCTCTTTTGGAGTTAAACAAATTGATTATTTGGGCCATGTGTTATCTAGAGCAGGAATGGCTATGGAGACTAAAAAATTGGCAGCCATTGACAGTTGGCCACAATCTACTTCCATCAAACAACTTAGAGGTTTTCTAGGCCTCACTAGTTACTATAGAATATTCATAAAGCATTATGTTTCTATGGTTGGTCCACTCACTGATTTGTTGAAGAAAAACTCATTTCAATGGTCTGCATTAGCTGCTCAAGCTTTTCTGCAGCTCAAACAAGCCATGACTTCTACACCAGTTTTGGCTCTTCCTAATTTCAAAGAACCCTTAATTCTTGAGACAGATGTGTCACGTTCGGGTATTAAGGCAATTTTAAGTCAAGAACAACATCTCCTATTGGGATTGAAAATGAAGGTCTTAGACTCAAGATTAAGGAAGAAAATTGAAGAAAAGAAGAGTCAAGAAACCGCCCTGCGAGGCAAACCGCCGGGCGGTGGCGCGATTAGGGGCAAACCGCTGAGCGGCATAAGCATGTGTGTCCCTCATTACTCGTGGTGCCACTGCTTGCGCACCGCTCGTGGTGCCACCGTTCGCTCACTGTGTCGTCCTTCGCTCTTTGTATCTCTCTTCTCCATCGCAGGTTTTTGTTCTAGAAAAGCTGAGCTTTTTCTGTTGTCACCTAGCTATGTAACACATGTCTTTCCTATTCTAGAAAAGGATGTTGTTTTGGCTAGAGTTTTGGATGATGCTACTATTGCTAATCTTAACTCCATAGTACATGCAGACAATTCTCTTGAATCAAAGAAAAATATGCATGACATTGCTATTTCATTAGTTGACATTTCCACTCTTGGTGGCATAGCTTATTATTTGTTCCACCCGACTGACGAAAAACTTGTTGCTTATTACCTTAAAAGGAAGATCAATAGTCGAAAGATGGAGTTGGAAACCATTCCAGAAGTTGATCTCGACAAGTGTGAACCATAG 1590 0.4057 MQLVESPSFKFPLVELPTDVEPKLALLLNTYQYVFEMPSFLPPNWSHDDSIPLIEGSQPVKVKPYRYLHSMLEEGIIQPTKSPFFSPIIFVKKKDGSLIVCTNYRALNVVTMKDIFPIPTVDELFRPQEARVLFIESRSSSLQVGKEKLAFPFSKVGAVPFELAKCSLPVRLSKEAPFRFDHLNNLEYVLKTLQHQKLYARLSTCSFGVKQIDYLGHVLSRAGMAMETKKLAAIDSWPQSTSIKQLRGFLGLTSYYRIFIKHYVSMVGPLTDLLKKNSFQWSALAAQAFLQLKQAMTSTPVLALPNFKEPLILETDVSRSGIKAILSQEQHLLLGLKMKVLDSRLRKKIEEKKSQETALRGKPPGGGAIRGKPLSGISMCVPHYSWCHCLRTARGATVRSLCRPSLFVSLFSIAGFCSRKAELFLLSPSYVTHVFPILEKDVVLARVLDDATIANLNSIVHADNSLESKKNMHDIAISLVDISTLGGIAYYLFHPTDEKLVAYYLKRKINSRKMELETIPEVDLDKCEP 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00934 529 SUPERFAMILY NAC domain 491 529 IPR036093 GO:0003677|GO:0006355
Vimu9g00934 529 Pfam No apical meristem (NAM) protein 492 529 IPR003441 GO:0003677|GO:0006355
Vimu9g00934 529 FunFam Transposon Tf2-6 polyprotein-like Protein 229 317 - -
Vimu9g00934 529 CDD RT_LTR 75 218 - -
Vimu9g00934 529 Gene3D - 228 310 IPR043128 -
Vimu9g00934 529 SUPERFAMILY DNA/RNA polymerases 181 330 IPR043502 -
Vimu9g00934 529 PANTHER TRANSPOSON TY3-I GAG-POL POLYPROTEIN 34 125 - -
Vimu9g00934 529 Gene3D NAC domain 496 529 IPR036093 GO:0003677|GO:0006355
Vimu9g00934 529 ProSiteProfiles NAC domain profile. 487 529 IPR003441 GO:0003677|GO:0006355
Vimu9g00934 529 Gene3D HIV Type 1 Reverse Transcriptase, subunit A, domain 1 42 163 - -
Vimu9g00934 529 Gene3D - 172 225 IPR043128 -
Vimu9g00934 529 Pfam RNase H-like domain found in reverse transcriptase 281 331 IPR041577 -
Vimu9g00934 529 SUPERFAMILY DNA/RNA polymerases 30 126 IPR043502 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00934 Vimu-Chr9 15531536 15537045 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00934 491 529 NAC Transcription Factor Family AT1G65910 74.359 3.53e-12 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00934 - - adu:107493360 291.582