Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00916 ATGGTATCAGAATTTTCGTGGGGTGGTGGATTGCTCAAGACCCAAACACCACCAAAGTGGTTTGTTGGGGGATCCTTGGAAATGCTAGACAACGCCTTCACATGGGCAAAAGTGGAGTTGAAGAGAATTGAGAACAAGATCAACAGGCAGGTGACCTTTGCAAAACGAAGAAACGGGCTTTTGAAGAAAGCTTATGAGCTTTCCGTTCTTTGTGATGCCGAGCTTGCTCTCATCATCTTCTCCACTAGAGGAAAGTTGTACGAGTTTTGCAGCACTTCAAGGGGTGAAAACCACAATCTCCTCCTTGCGTTCACAATTTCCCATTTTTCCCTCGCCAGAAAGTGCCACATCACCGACGACTTGGACAACGTGTTCGACGACGAGGAGGACGATGCGTGGAAGGAATGGGATGGATCCGTCGTAGATTCAGGAGGAGATGAAGAAGCGCCATGCCGGACCCGTCATCGGATTCGACAAGCTCCAGTTTGGGGTTCGCCGGACTTCGGTGTTGGTGGTGGTGAGGAAAAATGGTTTTCTGATGAGAAGTGGATGCCACCAAGTGGTGTTCAAGTGGGGACAGTGTATGGTCGGTTAGGGGACCCCACAACTCCTGGTTGGGCAAGTAGTGGTGGAGATTGTGAGAGGTTGAGCAAGGAGGAGGTGAAGAAGAGAGCTGCTGATGGGGAGAAGATAATGATGTCACTTGGTGGACCTGTTGCAGAGGATGATTGGAAGGGAAGCAAGGATGCTCCTGATTACAACCTTTGA 768 0.4987 MVSEFSWGGGLLKTQTPPKWFVGGSLEMLDNAFTWAKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAELALIIFSTRGKLYEFCSTSRGENHNLLLAFTISHFSLARKCHITDDLDNVFDDEEDDAWKEWDGSVVDSGGDEEAPCRTRHRIRQAPVWGSPDFGVGGGEEKWFSDEKWMPPSGVQVGTVYGRLGDPTTPGWASSGGDCERLSKEEVKKRAADGEKIMMSLGGPVAEDDWKGSKDAPDYNL 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00916 255 CDD MADS_MEF2_like 37 93 IPR033896 GO:0000977|GO:0045944
Vimu9g00916 255 MobiDBLite consensus disorder prediction 224 255 - -
Vimu9g00916 255 SUPERFAMILY SRF-like 36 99 IPR036879 GO:0003677|GO:0046983
Vimu9g00916 255 Gene3D - 165 255 - -
Vimu9g00916 255 Gene3D - 45 103 IPR036879 GO:0003677|GO:0046983
Vimu9g00916 255 SMART madsneu2 33 92 IPR002100 GO:0003677|GO:0046983
Vimu9g00916 255 SUPERFAMILY PA domain 169 250 IPR046450 -
Vimu9g00916 255 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 42 89 IPR002100 GO:0003677|GO:0046983
Vimu9g00916 255 PANTHER SERUM RESPONSE FACTOR HOMOLOG 36 106 - -
Vimu9g00916 255 PRINTS MADS domain signature 35 55 IPR002100 GO:0003677|GO:0046983
Vimu9g00916 255 PRINTS MADS domain signature 70 91 IPR002100 GO:0003677|GO:0046983
Vimu9g00916 255 PRINTS MADS domain signature 55 70 IPR002100 GO:0003677|GO:0046983
Vimu9g00916 255 ProSiteProfiles MADS-box domain profile. 33 93 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00916 Vimu-Chr9 14840488 14841908 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00916 37 95 MADS-box Gene Family AT2G03710 89.831 1.51e-31 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vimu9g00916 SRF-TF 4.8e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00916 K01301 - vra:111242568 204.912