Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vimu9g00911 | ATGCAACCAAGAACAAGTAGTGTTGGAGATGGCATTCGGGTAAGTACCTCAACTATACCTAGTAATTCTTGTGGTGGAACTGAACTAGATGACCTAGACTCATTTCGTGATGTGTACATATGGGGTAAGTTTTTGTCAAATGGGGTTTCACCTGATGGGATTGGAAATCAAATTCCTTCTCAGATAGATGTGTTGATTCCAAAGCCATTAGAGTCAAATGTTATTCTAGATGTTTGCCACATTGCAACTGGTGCACACCACATTGCTGTAGTAACTAAGCAAGGGAATGTTTTTACATGGGGAAAAGACTCAGGGGGAAGGCTTGGTCATGGAATTGACAAGGATTTTGTATCCCCACGTGAAGTTAAGTTTCTTGAAGGTACTGAGTTTGACTTTGTTGCATGTGGAGAGTATCACACAGGAGTTATATCTAAATGCTATGAACTTTATACATGGGGTGATGGAGCACATAATATTGGACTTCTTGGACATGGTTCTGAGGCTAGCCATTGGATGCCAAAAATGGTCAATGGCCCTTTAGAAGGAGTTGAAGTTGTGTGTGTTGCTTGTGGCACATGGCATTCAGCATTGGCAACCTCAGATGGAAAACTATTTACCTTTGGTGATGGTGCATTTGGTGTCTTGGGCCATGGAGATCAAGAGAGTGTGGTGTATCCAAAAGAAGTGAAACTTTTGAGTGGACTAAAGACTATAAAGGTTGCATGTGGAGTTTGGCACACAGCAGCTATTATGGAGGTTGAATTACAATCTGGTTCAGATGCTTCATCTGGGAAACTTTTCACATGGGGTAATGGAGATAAACATTGTCTGGGTCATGGAAACACAGAAACATACCTTCAACCTACTCGTGTTGCTCCACTTACGGGATATAACTTTCACCAAGTTGCATGTGGGCACACAATGACTGTTGCTTTAACTACTTCTGGTCATGTATTTGCAATGGGAGGAACTGAACATGGCCAATTGGGAAATCCTGTGGCATCTGGAAAAATACCTACTTTAGTCCAAGATAAGTTGCTGGGTGAGATTGTTGAGGAAATATCATGTGGAGCACATCATGTTGTTGCCTTGACAAAGAAAGGTGAACTGTATACATGGGGAAAGGGTGCCAATGGAAGATTAGGGCATGGAGATGTTGAAGATAGGAAATCTCCTACATTGGTTATAGCCATGAAAGATAGGACTATAGAAAACATCTCATGTGGCTCTAACTTTACATCATGTGTATGCATCCATAAATGGGTCTCTGGAGCTGATCAAACACTTTGCTCTGGTTGTCGACAAGCGTTTGGTTTAACAAGAAAAAGGCACAATTGTCACCACTGTGGTTTGGTATTTTGTCATGCGTGTAGTACTAAAAGAGCATTCAAAGCAGCATTGACTGCAACACCAGAAAAACTTCATCGTGTGTGTGATAATTGTTATGTTAAGCTCAAAGTTTTTGATGAAAATGGTCCTTCCAAATTAGACAAAAAGCCTACTACCACCACTGCCACTACTACTAATAACTCCATAAATGAAAAGGAAAAATCAAACCAAGCAGCAATAAGACCCTCAAGAATTCTCTTGGCTGCTATAACTGAACCAGTGAAATACCTTGAAATAAAGAATAATAACCCTGAAGATAATGGTGATTCTACTTCCTTTGTACGAGCTTCCCTTGTTCCATCTCTTGTACAATTGAAAGATGTTGCATTTCCAACTTCACTTAGTTCTATTCAAACTATTTTAAAGCCTATAATTCCTCTTAGTCCGCCACAAACTCCGCCGCAAACACCGACACCAAATACCAGTCCGGGACCCAAATTTACAAACACAGTGAGACAAAGCGCTGCTCGCCCTGCTAGCCCTAGGTTTTATGGAAGTATTAACGAGAGTTTAAGAAGGACAAATGATATTTTGAATCAAGAAGTTGCAAAGTTACAGAAACAGATTCAAAGTTTAAAGGACAAAAGTGACATGCAAGATTTGGAAATCAAAAGGCTTAACAAAAAGGCTACGGAAGCTTCTGCCCTTGCTGCAGTGGAATTTTCTAATCACAGAGTAACGAAAGAATTTGTTGAATCTACTATATCTCAGATGAAGGAAGTGACTGACAAATTGCCTGGAGAAATTTCAGAAAGTCGGCATTTGAAAGATGTACTTATTCGAGTCAAAGATTTTCTTAAAGAAACTTCAGAATCTGAAACATCTTCATCACCAAAGTTGAAGACTGAGCCAAAAGTTGCACCTGAAATACCTACCTCAAATAACGACTCTTTCAAATTCCAGTCTGAAGATAAAGTGGCTGCAACAGAAGCCAAACCTTGTCAAGATGAACTTGAACAAAACAAAAAATCAAACTTAAAACCTGAGAAACAAAATGAGGATCATGATAAACAAAATTTGCATGAAGAAACAGATAAATCAAAATTGGAGTCAACACAACAAAATATACCTAGCTCAGATTCCATCACTTCCGAAATGCATGAACACAAACTCGATGAAATCGTTCATGTCATAGAAGTTAACCATTGTGAAGAAAGAGGAAACTCTATCAAAGAAAATGATGGATCAAAGCAAGAAATTGAAAACCAAAAGGAACCTCGTACACTTTCCTCAGCTAGTGACATTTCTGAATTGTTAGATGATCATAGACTAGATAATGCTGAGGTTGCAGGAGTTGATGAAACTCAGGAACAAGATCATGTCTTCCATGAATGTATTGGTACACAAATGACTTTAGAAAACTCCGAAGATGGTTCAAGATCTTCACGACCAGGAAACCAGGGAGAAGTACAAGTTATTGAAAAATTTGATCATGGAGTTTATGTGATTCTCATGAAACGGCCTGATGGTACCAAAATTTTTAAACGAGTTAAATTCAGTAGACGAAGATTCACTGAAAATCAAGCAGAAAAATGGTGGGACGAAAACAAAAGTGCGGTTCTTAGGAAATATTGTCCAACACATAAAAAAATATCAATTGGACCACCTAATGTCACATCACATGTTAAAGAAATTATTAAGACTCCTCCTTCATCAATAGATTAG | 3054 | 0.3874 | MQPRTSSVGDGIRVSTSTIPSNSCGGTELDDLDSFRDVYIWGKFLSNGVSPDGIGNQIPSQIDVLIPKPLESNVILDVCHIATGAHHIAVVTKQGNVFTWGKDSGGRLGHGIDKDFVSPREVKFLEGTEFDFVACGEYHTGVISKCYELYTWGDGAHNIGLLGHGSEASHWMPKMVNGPLEGVEVVCVACGTWHSALATSDGKLFTFGDGAFGVLGHGDQESVVYPKEVKLLSGLKTIKVACGVWHTAAIMEVELQSGSDASSGKLFTWGNGDKHCLGHGNTETYLQPTRVAPLTGYNFHQVACGHTMTVALTTSGHVFAMGGTEHGQLGNPVASGKIPTLVQDKLLGEIVEEISCGAHHVVALTKKGELYTWGKGANGRLGHGDVEDRKSPTLVIAMKDRTIENISCGSNFTSCVCIHKWVSGADQTLCSGCRQAFGLTRKRHNCHHCGLVFCHACSTKRAFKAALTATPEKLHRVCDNCYVKLKVFDENGPSKLDKKPTTTTATTTNNSINEKEKSNQAAIRPSRILLAAITEPVKYLEIKNNNPEDNGDSTSFVRASLVPSLVQLKDVAFPTSLSSIQTILKPIIPLSPPQTPPQTPTPNTSPGPKFTNTVRQSAARPASPRFYGSINESLRRTNDILNQEVAKLQKQIQSLKDKSDMQDLEIKRLNKKATEASALAAVEFSNHRVTKEFVESTISQMKEVTDKLPGEISESRHLKDVLIRVKDFLKETSESETSSSPKLKTEPKVAPEIPTSNNDSFKFQSEDKVAATEAKPCQDELEQNKKSNLKPEKQNEDHDKQNLHEETDKSKLESTQQNIPSSDSITSEMHEHKLDEIVHVIEVNHCEERGNSIKENDGSKQEIENQKEPRTLSSASDISELLDDHRLDNAEVAGVDETQEQDHVFHECIGTQMTLENSEDGSRSSRPGNQGEVQVIEKFDHGVYVILMKRPDGTKIFKRVKFSRRRFTENQAEKWWDENKSAVLRKYCPTHKKISIGPPNVTSHVKEIIKTPPSSID | 1017 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vimu9g00911 | 1017 | Gene3D | - | 259 | 418 | IPR009091 | - | |
| Vimu9g00911 | 1017 | MobiDBLite | consensus disorder prediction | 497 | 519 | - | - | |
| Vimu9g00911 | 1017 | Pfam | FYVE zinc finger | 420 | 485 | IPR000306 | GO:0046872 | |
| Vimu9g00911 | 1017 | Pfam | Transcription factor regulating root and shoot growth via Pin3 | 934 | 987 | IPR013591 | - | |
| Vimu9g00911 | 1017 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 147 | 201 | IPR000408 | - | |
| Vimu9g00911 | 1017 | MobiDBLite | consensus disorder prediction | 589 | 604 | - | - | |
| Vimu9g00911 | 1017 | SUPERFAMILY | FYVE/PHD zinc finger | 420 | 488 | IPR011011 | - | |
| Vimu9g00911 | 1017 | MobiDBLite | consensus disorder prediction | 848 | 876 | - | - | |
| Vimu9g00911 | 1017 | MobiDBLite | consensus disorder prediction | 766 | 812 | - | - | |
| Vimu9g00911 | 1017 | SMART | fyve_4 | 416 | 487 | IPR000306 | GO:0046872 | |
| Vimu9g00911 | 1017 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 202 | 253 | IPR000408 | - | |
| Vimu9g00911 | 1017 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 81 | 91 | IPR000408 | - | |
| Vimu9g00911 | 1017 | Gene3D | - | 15 | 258 | IPR009091 | - | |
| Vimu9g00911 | 1017 | MobiDBLite | consensus disorder prediction | 751 | 765 | - | - | |
| Vimu9g00911 | 1017 | CDD | FYVE_like_SF | 430 | 482 | - | - | |
| Vimu9g00911 | 1017 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 95 | 146 | IPR000408 | - | |
| Vimu9g00911 | 1017 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 316 | 367 | IPR000408 | - | |
| Vimu9g00911 | 1017 | ProSiteProfiles | Zinc finger FYVE/FYVE-related type profile. | 424 | 486 | IPR017455 | - | |
| Vimu9g00911 | 1017 | MobiDBLite | consensus disorder prediction | 731 | 825 | - | - | |
| Vimu9g00911 | 1017 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 21 | 695 | - | - | |
| Vimu9g00911 | 1017 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 368 | 419 | IPR000408 | - | |
| Vimu9g00911 | 1017 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 264 | 315 | IPR000408 | - | |
| Vimu9g00911 | 1017 | MobiDBLite | consensus disorder prediction | 588 | 627 | - | - | |
| Vimu9g00911 | 1017 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 240 | 250 | IPR000408 | - | |
| Vimu9g00911 | 1017 | Coils | Coil | 631 | 672 | - | - | |
| Vimu9g00911 | 1017 | MobiDBLite | consensus disorder prediction | 848 | 867 | - | - | |
| Vimu9g00911 | 1017 | PRINTS | Chromosome condensation regulator RCC1 signature | 363 | 384 | IPR000408 | - | |
| Vimu9g00911 | 1017 | PRINTS | Chromosome condensation regulator RCC1 signature | 147 | 163 | IPR000408 | - | |
| Vimu9g00911 | 1017 | PRINTS | Chromosome condensation regulator RCC1 signature | 188 | 204 | IPR000408 | - | |
| Vimu9g00911 | 1017 | PRINTS | Chromosome condensation regulator RCC1 signature | 204 | 218 | IPR000408 | - | |
| Vimu9g00911 | 1017 | PRINTS | Chromosome condensation regulator RCC1 signature | 305 | 323 | IPR000408 | - | |
| Vimu9g00911 | 1017 | PRINTS | Chromosome condensation regulator RCC1 signature | 97 | 113 | IPR000408 | - | |
| Vimu9g00911 | 1017 | ProSiteProfiles | BRX domain profile. | 933 | 988 | IPR013591 | - | |
| Vimu9g00911 | 1017 | MobiDBLite | consensus disorder prediction | 494 | 520 | - | - | |
| Vimu9g00911 | 1017 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 315 | 364 | IPR000408 | - | |
| Vimu9g00911 | 1017 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 263 | 312 | IPR000408 | - | |
| Vimu9g00911 | 1017 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 367 | 415 | IPR000408 | - | |
| Vimu9g00911 | 1017 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 201 | 250 | IPR000408 | - | |
| Vimu9g00911 | 1017 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 95 | 143 | IPR000408 | - | |
| Vimu9g00911 | 1017 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 149 | 197 | IPR000408 | - | |
| Vimu9g00911 | 1017 | MobiDBLite | consensus disorder prediction | 605 | 619 | - | - | |
| Vimu9g00911 | 1017 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 419 | 494 | IPR013083 | - | |
| Vimu9g00911 | 1017 | SUPERFAMILY | RCC1/BLIP-II | 36 | 421 | IPR009091 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vimu9g00911 | Vimu-Chr9 | 14751750 | 14759245 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vimu9g00911 | 914 | 987 | Major Intrinsic Protein MIP | AT1G31880 | 33.784 | 4.25e-08 | 54.7 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Vimu6g00127 | 6 | 1510346 | 1524802 | Vimu9g00911 | 9 | 14751750 | 14759245 | PCT |