Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00904 ATGGTGAGCATTGTATCTGATTTGGCAAAGTCAACTCTCGAGAAATTGATTAATGCAACACTAGAAGAATCACGTTATATTTGTTGCTTCACATGCATTACTGATGACTTTGAAAAGGAAAGGGAAAATTTGATAGGAAAAAAGGAAACATGGGAAGAGTATGCTAGAGTGGCAACTAGAAGAGGTGATAACATACGAAAAGATGTCACACATTGGCAAAAGCAAGCTAAAGAACTTATTGAAGAAGACACCAAAATGAAAGTGAAGTGTATTTTTGGATGGTGTCCTAACTGTATATGGCAATATAGTAGGGGGAAGGAATTGGAAAGCAAGACAGAGAAGATTAAAAAACTGATGGAATGCAACTTTGAAAATGTTGGAATCACTCGTGATGTTCCTGACATTGAATATCACTCTTCACAAAATTACATTTCTTTCAAAAGTAGAAAGTTGAAATTTGAAGAACTTTTTAATGCCTTGAAAGATAACAACAACTATATGATTGGATTGCAAGGGATGGGGGGCATAGGTAAAACAACATTAGCAAAAGAGGTGGGTAAGGAGCTTAAGAAGTCAAAATGTTTTAATCAAGTTATTGATACTACAATATCTAATTCCCCTTATATAAAAAGGATTCAAGATGAGATTGCAGGACCGTTAGGACTGTCATTCGAGAATTGTACTGAATCAGAGAGGGCTAGAAAGTTGATGGGTAGATTAACCAATGCTGACAAAATTCTTCTAATTCTAGATGATGTGTGGGGAAATATCAGTTTTGGAGAAATAGGTATTCCATTTAAGGACAACCACAATAATTGTAAAATTCTTGTGACCACTCGCTATATAAGAACATGCAACAAAATGGGATGTGAGAAGATAATTCAACTTGATATCTTAACAGAGGAAGAAGGATGGATATTGTTCCAAAAGTATGCTGGTTTAAGTGATAATTCCTCTAAAAGTATTCTTTATAAAGGTAGCAAAATTTCGAAAGAGCGTAAAGGATTGCCAATTGCAATTGAAATTATTGCCAGTAGTTTAAAGGGCACACTACCTCTAGAAGAATGGGATTTAGCCTTAAAACCCTTGCAGAAGTCCATGCACGTACCCTATGATGATGAAAGTTTGAGAAAAATTTATACATGTCTAAAGTATAGTTATGACAATGTGAAGGATGAAACAGCCAAGAAATTGTTCCTTTTATGTTCTATGTTTCGAGAAAATGAAGAAATATCTGAAGAACTTTTAGTCAGACTTGCTAAAGGGGCAACTCTCATTGAGAAAAGTGATGACGATGACAGTTACGACGAATGTCGTAAGAAAGTTATTGCATTTTCTAACTATGGTGAACACTTACAGGTAAATGAGCCCAATGCAAATGATGTGATTGCACAATACATGAGTGTGGAACTGGAAAATATGTCATTGGATGATACATCCAAGATTCTTTTTACTCTACAAAACGTTACTGTGTTAAGTATTGAGAGGTGTGAAAAAGTTGAAGTACTATTTTGTGCTTCTATGCTGGAATGTTTACCATATTTAGGTGCACTTAGCATCTTTAGATGCATTGAATTAAAACAGATAATTGGTGAGGATGCAAAGAATCAGAGAAAGCCATTTTTCCCAAGGCTGAAAGCACTTATCATAAGAGAATGCAACAAATTGAAATGCATCTTTCCCATTTCAACTTCGGAAATGGTACCCATGTTAGAAGCTCTGTTAATCATGGAAGCAAGTATGCTAGAGGAAGTATTCGAAGGAAACAATGATGAAAAGGTTGAGATTCCAAATCTGAAAACTGCAAGCTTTGTTGAACTTCCAAGCCTTCGCCAGAAGATTGAATTTCTTACCGTAAAACATTGTTTGGTGAGGAATTGTCCAAAACTGTACTTCTCTTCATTCCCTCAAGATCTCAAACATTTTTCTATGACAGAATATTTGAAAAGTGAGTATGTCGATGGGATAATAAGTGGAGCTCTTGGTAATCTTAATCCCGAACAGAATCGCTATGAAGAAGACTCTGCAATTGGGACTGAAGTTGAAGCAGCATCATTCAGAGGGAGTGATGAGTTAACTTCATCACAGAATAATGCAAACCAATCTACTCTTGCCAAGATTGATGAAGACAACCAACAACATGAGGAAGTAGTGAAAGAAAGCAAAGAAAGAGTAGAGGAAGAACAACAAATTGTTGGAAAAGCTTCATCAATGCCAATATCACCAACAGATTTTCCTCAACATAAAACACATTCACCAGTAAGTTTCTTGTTTTAG 2277 0.3557 MVSIVSDLAKSTLEKLINATLEESRYICCFTCITDDFEKERENLIGKKETWEEYARVATRRGDNIRKDVTHWQKQAKELIEEDTKMKVKCIFGWCPNCIWQYSRGKELESKTEKIKKLMECNFENVGITRDVPDIEYHSSQNYISFKSRKLKFEELFNALKDNNNYMIGLQGMGGIGKTTLAKEVGKELKKSKCFNQVIDTTISNSPYIKRIQDEIAGPLGLSFENCTESERARKLMGRLTNADKILLILDDVWGNISFGEIGIPFKDNHNNCKILVTTRYIRTCNKMGCEKIIQLDILTEEEGWILFQKYAGLSDNSSKSILYKGSKISKERKGLPIAIEIIASSLKGTLPLEEWDLALKPLQKSMHVPYDDESLRKIYTCLKYSYDNVKDETAKKLFLLCSMFRENEEISEELLVRLAKGATLIEKSDDDDSYDECRKKVIAFSNYGEHLQVNEPNANDVIAQYMSVELENMSLDDTSKILFTLQNVTVLSIERCEKVEVLFCASMLECLPYLGALSIFRCIELKQIIGEDAKNQRKPFFPRLKALIIRECNKLKCIFPISTSEMVPMLEALLIMEASMLEEVFEGNNDEKVEIPNLKTASFVELPSLRQKIEFLTVKHCLVRNCPKLYFSSFPQDLKHFSMTEYLKSEYVDGIISGALGNLNPEQNRYEEDSAIGTEVEAASFRGSDELTSSQNNANQSTLAKIDEDNQQHEEVVKESKERVEEEQQIVGKASSMPISPTDFPQHKTHSPVSFLF 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00904 758 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 144 402 IPR027417 -
Vimu9g00904 758 FunFam Probable disease resistance protein At1g61300 130 293 - -
Vimu9g00904 758 Gene3D Ribonuclease Inhibitor 465 657 IPR032675 -
Vimu9g00904 758 MobiDBLite consensus disorder prediction 734 750 - -
Vimu9g00904 758 Coils Coil 704 731 - -
Vimu9g00904 758 Gene3D - 95 295 IPR027417 -
Vimu9g00904 758 MobiDBLite consensus disorder prediction 708 730 - -
Vimu9g00904 758 Gene3D - 298 391 IPR042197 -
Vimu9g00904 758 Pfam NB-ARC domain 153 389 IPR002182 GO:0043531
Vimu9g00904 758 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 470 632 - -
Vimu9g00904 758 PRINTS Disease resistance protein signature 240 254 - -
Vimu9g00904 758 PRINTS Disease resistance protein signature 333 347 - -
Vimu9g00904 758 PRINTS Disease resistance protein signature 167 182 - -
Vimu9g00904 758 PRINTS Disease resistance protein signature 484 500 - -
Vimu9g00904 758 MobiDBLite consensus disorder prediction 703 758 - -
Vimu9g00904 758 SUPERFAMILY RNI-like 476 629 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00904 Vimu-Chr9 14350867 14355381 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00904 168 411 WRKY Transcription Factor Family AT5G45050 26.562 1.14e-07 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00904 - - vra:111242488 857.055