Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00884 ATGTCTTTCAGTTTCACTGACCTACTTTCTAACAGCAATAGCTTAACCATGGATGATGATCCTTTTGGACTTGAATTTCCTAACACTTTCAAACAACTTCAACCTCTCCCTTCTTATTCTGAGTTCCCACCTGGTTTTGCTCCAACAACACAGTCATTGAACTCACCCCTCTTGTTTTCTTCTCAGAATGTAAGTTTACCATCAGTTATCGCCATTATTGTACCTGATGAAAAAGTGTTTTTCCTTTGGGTTCCTGCATCATACACAAATGAGTCATCTTCCAGCATGAGCTTCAACATGAGAAACAGTTCAACTGTGAACCAGCTAGGAAACAAGGAGGAAGAGAGAAACTACTCTGACTTCTCTTTCCTAACAAAAACAAACCACATGCCTCTCTTTCAATCTTCCACAAGCATGTTTCAAGTGGAGCCACTAAAGAAACAGGACACAATGATATTCAACGAAGCTGCAAAGCAAACAGATTTCTCATCCGAGAGGACAGAAACAAAATCTGAATATGCAACAACTCAGGGCTTCTCCACAGAAGTTGTCTCAATCAAACCTGAAATACAAAGCAATTCTACTTCTGGGTCTGTTCAATTTAACTCCAACAATGCTTTTAAGTCCATTAGAGAGCAAAGGAGATCAGAAGATGGGTACAATTGGAGGAAGTATGGAGAGAAACAAGTGAAAGGAAGTGAGAATCCACGCAGTTATTACAAGTGCACTTATCCAAATTGTCCAACAAAGAAGAAAGTTGAGAGGTCTTTGGAGGGACATGTTACTGAAATAGTATACAGGGGAAGTCACAATCATCCTAAGCCACATAATAGAAAAAATGGCTCTCAATCAATGCATCAAACTTCTTCATCCTGCACCATCTCTGGGATTTCAGATCAGTCTATTGGAGAGGAAGATTTTGAACAAACATCACAAACTAGTTGCTCTGGAGGAGTTGATGATGATGACTTTGGTCCTGAGGCCAAAAGATGGAAGGGAGAGAATGAAAATGATGACTATTCTAATTCTTCAGCTGGGAGTAGAACTGTTAAGGAGCCTAGAGTTGTGGTTCAAACCACAAGTGAAATTGACGTACTTGATGATGGATATAGGTGGAGGAAATATGGACAGAAAGTGGTCAAAGGAAACCCAAACCCAAGGAGTTACTACAAATGCGTAGCCCCAGGTTGTCCAGTGAGAAAACATGTTGAGAGAGCTGCAAATGACATGAAAGCTGTGCTAACAACCTATGAAGGGAAACATAACCATGATGTTCCTTTAGGACGAGGAAATGCAAGCTATAACAGAGCTTCTCTAAACAACAACACCAGCAATGTAACAGCACCTGCCCCAATAAGGCCTTCAGCAGTGAATAATTATTCTAACTCAGCAAGTTTCATCAATTCACTCCCAGACACAAAGCTCTCAGCATCTGCAAGTCAAGAAGCTGTTCCGATGGACATGTTGCTGAGCCCTGGAAGCCTAGGATTTTCGTCTAATGACTCATTCCTTCAGTCTTTTTTCTCAAAGAACTTCTAA 1539 0.4068 MSFSFTDLLSNSNSLTMDDDPFGLEFPNTFKQLQPLPSYSEFPPGFAPTTQSLNSPLLFSSQNVSLPSVIAIIVPDEKVFFLWVPASYTNESSSSMSFNMRNSSTVNQLGNKEEERNYSDFSFLTKTNHMPLFQSSTSMFQVEPLKKQDTMIFNEAAKQTDFSSERTETKSEYATTQGFSTEVVSIKPEIQSNSTSGSVQFNSNNAFKSIREQRRSEDGYNWRKYGEKQVKGSENPRSYYKCTYPNCPTKKKVERSLEGHVTEIVYRGSHNHPKPHNRKNGSQSMHQTSSSCTISGISDQSIGEEDFEQTSQTSCSGGVDDDDFGPEAKRWKGENENDDYSNSSAGSRTVKEPRVVVQTTSEIDVLDDGYRWRKYGQKVVKGNPNPRSYYKCVAPGCPVRKHVERAANDMKAVLTTYEGKHNHDVPLGRGNASYNRASLNNNTSNVTAPAPIRPSAVNNYSNSASFINSLPDTKLSASASQEAVPMDMLLSPGSLGFSSNDSFLQSFFSKNF 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00884 512 ProSiteProfiles WRKY domain profile. 361 426 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu9g00884 512 Pfam WRKY DNA -binding domain 217 273 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu9g00884 512 Pfam WRKY DNA -binding domain 367 423 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu9g00884 512 SMART WRKY_cls 216 274 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu9g00884 512 SMART WRKY_cls 366 425 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu9g00884 512 SUPERFAMILY WRKY DNA-binding domain 358 426 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu9g00884 512 MobiDBLite consensus disorder prediction 338 353 - -
Vimu9g00884 512 MobiDBLite consensus disorder prediction 322 337 - -
Vimu9g00884 512 MobiDBLite consensus disorder prediction 280 318 - -
Vimu9g00884 512 FunFam WRKY transcription factor 203 276 - -
Vimu9g00884 512 MobiDBLite consensus disorder prediction 265 353 - -
Vimu9g00884 512 ProSiteProfiles WRKY domain profile. 211 275 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu9g00884 512 FunFam WRKY transcription factor 33 353 419 - -
Vimu9g00884 512 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 137 445 IPR044810 GO:0003700
Vimu9g00884 512 SUPERFAMILY WRKY DNA-binding domain 211 275 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu9g00884 512 Gene3D WRKY domain 351 427 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu9g00884 512 Gene3D WRKY domain 201 276 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00884 Vimu-Chr9 13771900 13774872 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00884 211 462 WRKY Transcription Factor Family AT2G38470 58.042 3.53e-106 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vimu9g00884 WRKY 9.8e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00884 K13424 - gmx:100127367 797.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g00078 6 946589 948991 Vimu9g00884 9 13771900 13774872 PCT