Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00880 ATGGGAGGGTGTTGCAGCCATGTTTCAGTACATGATGTGGAATTTTCATGCAAGCATAACCATGATGATGGTGCATGTGAACATGGTGGGGACCGTATCATGTCAAGAGGGTCCTCTGAATTTGTATCAATGTACAGCAAAAAGGGTTCAAAAGAAGTTAATCAAGATGCGTTGACTGTGTGGAAGGACTTCACTGCAAAGAAGGACATGATCTTTTGTGGCGTGTTTGATGGTCATGGTCCTCTGGGGCACAAGTTTTCACAGTCTATCCGTGACAAACTACCCTCAAAACTCTCAGCATCAATCAAACAGTCACAACAAAAAGTCATCAAACACAATGATACTAATGCTACAGATGGAATTAGTCATAGTAAAGTGCATGTTGAGGATAAACAAAATATGTCATTTTCTTCATGGGAGGGAAGCTTTATGAAGTGCTTCAGTGAAATGGATGAATACCTTGCTAAGAACATAGACTCTAAAGGGTTTTCTGGAGGTAGCACTGCTGTAACTGTTATCAAACAGGGTGACCAATTAATAATTGGCAATTTGGGAGATTCACGTGCAGTTCTTTGCAGAAGAACAGATGACAACCATCTTGTTCCTGTTCAACTTACTGTTGACTTGACACCAGATATTCCAAGTGAAGCTTTAAGAATCATTAATTGCGGAGGTAAAATTTTTTCTGTAAAAGAAGAACCAAGAGTAAATAGACTATGGAGGCCAAATGGGAGTCGCCCTGGACTGGCTATGGCAAGAGCCTTTGGAAATTTTTGCCTAAAAGATTATGGTCTCATCTCAGTCCCTGATCTATCATACAGAAAACTTACAGAGCAGGATGAGTTTGTGGTTCTGGCTTCTGATGGGGTATGGGATGTGCTAACAAACAGTGAAGTAATGGACATAGTTGCTTCAGCACCAAAAAGGTCCATGGCAGCTAAATTGTTAGTGGACCATGCAGTTAAAGCATGGAAACGTAAGTATGTTTCCATGGTTGATGATTGTACAGCTATATGCTTGTTCCTGAAGGATCAAACTGTTTTAACCCAATCCTGA 1056 0.4062 MGGCCSHVSVHDVEFSCKHNHDDGACEHGGDRIMSRGSSEFVSMYSKKGSKEVNQDALTVWKDFTAKKDMIFCGVFDGHGPLGHKFSQSIRDKLPSKLSASIKQSQQKVIKHNDTNATDGISHSKVHVEDKQNMSFSSWEGSFMKCFSEMDEYLAKNIDSKGFSGGSTAVTVIKQGDQLIIGNLGDSRAVLCRRTDDNHLVPVQLTVDLTPDIPSEALRIINCGGKIFSVKEEPRVNRLWRPNGSRPGLAMARAFGNFCLKDYGLISVPDLSYRKLTEQDEFVVLASDGVWDVLTNSEVMDIVASAPKRSMAAKLLVDHAVKAWKRKYVSMVDDCTAICLFLKDQTVLTQS 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00880 351 Gene3D - 34 345 IPR036457 -
Vimu9g00880 351 SMART PP2C_4 31 340 IPR001932 -
Vimu9g00880 351 ProSiteProfiles PPM-type phosphatase domain profile. 41 342 IPR001932 -
Vimu9g00880 351 SUPERFAMILY PP2C-like 39 344 IPR036457 -
Vimu9g00880 351 CDD PP2Cc 41 342 IPR001932 -
Vimu9g00880 351 PANTHER PROTEIN PHOSPHATASE 39 340 IPR015655 GO:0004722|GO:0006470
Vimu9g00880 351 Pfam Protein phosphatase 2C 97 322 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00880 Vimu-Chr9 13732476 13734210 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00880 32 346 PP2C-type Phosphatase Gene Family AT1G16220 47.576 3.77e-111 331
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00880 - - vra:106755106 681.019
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g00062 6 758770 766246 Vimu9g00880 9 13732476 13734210 PCT