Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00845 ATGGGACACAACAGTTGTCATGTCAAAGATTTCTACACAGACCCTTTTCAGGTTAACCTCTCTTTTGCTTCATATGGTCATAGGAGGAGGAACCTCAAAGGTGGTGGGGGTGGTGGTTTTATTTGCTTAGCTTTTTTTGTTTTTCTTTTGCAAGCTTTGGCTTCTGTCATTCAGCCTGTTTCAGGGCAGTTGTGGGATGGGGTGGTTGTGACTCAAGCTGATTTTCAAGCCCTGAGGGCTATTAAGAATGAGCTAATTGACTTCAAAGGGGTTCTCAAGAGCTGGAATGACAGTGGTCTAGGTGCTTGTTCTGGGTGGGCAGGAATCAAGTGTGTGAATGGTGAGGTTATTGCAATTCAGCTTCCTTGGAGAGGGTTAGGTGGCAGGATCTCTGAGAAAATTGGCCAACTTCAGTCTCTTAGGAAGCTCAGTCTTCATGACAATGTTCTTGCTGGTCCAGTTCCTTTGTCACTTGGCCTCCTTCCCAACCTTAGAGGGGTTTATCTCTTCAATAACAAGCTTTCAGGTTCTATCCCTCCTTCCCTTGGCAATTGTCCAATGCTTCAGTCTCTTGATATTAGCAACAATTCCCTCAGTGGTAAAATCCCTCCCAGTTTAGCGAGATCTACTAGGATGCTTCGGATCAATTTGAGCTTCAACTCACTTTCTGGATCCATTCCTAGCAGTTTAACCATGTCTCCTTCTCTAACCATTATTTCCCTTCAACACAACAACCTCTCTGGCTCTATCCCAGATTCTTGGGGTGGAGCTGGAAAGAAGAAAGCTTCCCAGCTTCAGGTTTTGACCCTTGATCACAATCTCATTTCTGGAATCATCCCAGTTTCTCTAGGCAAGCTAGCTTTACTTGAAAATGTTTCTTTGAGTCATAACCTGATTGTAGGGCCTATTCCAAGTGAACTAGGTGCACTTTCTAGGCTTCAAATTCTTGATCTTTCAAACAATGCTATCAATGGCAGCATTCCTGCTAGCTTCTCTAACCTCTCTTCTCTAGTTTCATTAAACCTAAATAGCAATCAACTTGCAAACCATATTCCTGATTCTTTGGACAGATTGCACAACCTTTCTGTGCTTAACCTGAAGAACAATAAGCTTGATGGTGAAATCCCACCAACAATAGGGAACATCTCAAGCATTAGCCAAATTGATTTCTCTGAGAACAAATTAGTTGGAGGAATCCCAGATTCCTTTACTAAACTTGCGCATCTCAGTTCATTCAACGTCTCTTACAACAACCTATCTGGTCCTGTCCCATCTCTACTTTCCAAAAGATTCAATGCTAGCTCTTTCGTAGGGAATCTTGAGCTATGTGGGTATATCAGTTCAAAACCATGCTCTTCACCCCCTCCTCATAATCTTCCAGCTCAATCACCACAACCTCTTTCTAAGCCTCATCACCGAAAACTAAGCACCAAGGACATAATCCTCATAGTAGCAGGTGTTCTTCTGTTGATTCTGTTATTACTGTGCTGCTTTTTGTTGTGTTGTTTGGTCAGGCGAAGAACTGCTTCAAGCAGAAAGAGTGGCAAAGCTGCTAAGGCTGCAGCATCTGCTAGGAGTCTTGAGAAAGGTGCTTCAGCTGGTGGTGAGGTTGAATCAGGAGGTGAAGCTGGTGGGAAACTAGTTCACTTTGATGGGCCTTTTGTGTTTACTGCTGATGATCTTCTGTGTGCAACTGCGGAGATAATGGGAAAAAGTGCATATGGAACAGCATACAAAGCAACACTGGAAGATGGTAACCAAGTTGCTGTGAAGAGGTTGAGGGAAAAGACTACTAAAGGGCAGAAGGAGTTTGAAACTGAGGTTGCTGCACTTGGCAAAATCAGACACCCAAATCTCCTAGCACTTAGAGCCTACTATTTAGGACCAAAAGGAGAGAAGCTTCTTGTCTTTGATTACATGACAAAAGGAAGTCTTGCATCATTCCTTCATGGTAAGTAA 1959 0.4324 MGHNSCHVKDFYTDPFQVNLSFASYGHRRRNLKGGGGGGFICLAFFVFLLQALASVIQPVSGQLWDGVVVTQADFQALRAIKNELIDFKGVLKSWNDSGLGACSGWAGIKCVNGEVIAIQLPWRGLGGRISEKIGQLQSLRKLSLHDNVLAGPVPLSLGLLPNLRGVYLFNNKLSGSIPPSLGNCPMLQSLDISNNSLSGKIPPSLARSTRMLRINLSFNSLSGSIPSSLTMSPSLTIISLQHNNLSGSIPDSWGGAGKKKASQLQVLTLDHNLISGIIPVSLGKLALLENVSLSHNLIVGPIPSELGALSRLQILDLSNNAINGSIPASFSNLSSLVSLNLNSNQLANHIPDSLDRLHNLSVLNLKNNKLDGEIPPTIGNISSISQIDFSENKLVGGIPDSFTKLAHLSSFNVSYNNLSGPVPSLLSKRFNASSFVGNLELCGYISSKPCSSPPPHNLPAQSPQPLSKPHHRKLSTKDIILIVAGVLLLILLLLCCFLLCCLVRRRTASSRKSGKAAKAAASARSLEKGASAGGEVESGGEAGGKLVHFDGPFVFTADDLLCATAEIMGKSAYGTAYKATLEDGNQVAVKRLREKTTKGQKEFETEVAALGKIRHPNLLALRAYYLGPKGEKLLVFDYMTKGSLASFLHGK 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00845 652 Pfam Leucine rich repeat N-terminal domain 73 111 IPR013210 -
Vimu9g00845 652 Pfam Protein tyrosine and serine/threonine kinase 567 651 IPR001245 GO:0004672|GO:0006468
Vimu9g00845 652 Gene3D Phosphorylase Kinase; domain 1 569 641 - -
Vimu9g00845 652 SUPERFAMILY L domain-like 110 452 - -
Vimu9g00845 652 ProSiteProfiles Protein kinase domain profile. 563 652 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu9g00845 652 SMART LRR_typ_2 358 382 IPR003591 -
Vimu9g00845 652 SMART LRR_typ_2 161 185 IPR003591 -
Vimu9g00845 652 SMART LRR_typ_2 406 429 IPR003591 -
Vimu9g00845 652 SMART LRR_typ_2 310 333 IPR003591 -
Vimu9g00845 652 SMART LRR_typ_2 334 357 IPR003591 -
Vimu9g00845 652 Gene3D Ribonuclease Inhibitor 187 259 IPR032675 -
Vimu9g00845 652 Gene3D Ribonuclease Inhibitor 73 186 IPR032675 -
Vimu9g00845 652 Pfam Leucine rich repeat 311 371 IPR001611 GO:0005515
Vimu9g00845 652 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 255 454 - -
Vimu9g00845 652 SUPERFAMILY Protein kinase-like (PK-like) 567 651 IPR011009 -
Vimu9g00845 652 PRINTS Leucine-rich repeat signature 310 323 - -
Vimu9g00845 652 PRINTS Leucine-rich repeat signature 188 201 - -
Vimu9g00845 652 PANTHER OS05G0588300 PROTEIN 261 355 - -
Vimu9g00845 652 Pfam Leucine Rich Repeat 188 206 IPR001611 GO:0005515
Vimu9g00845 652 Gene3D Ribonuclease Inhibitor 260 457 IPR032675 -
Vimu9g00845 652 FunFam Leucine-rich repeat receptor-like protein kinase 548 639 - -
Vimu9g00845 652 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 71 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00845 Vimu-Chr9 13034703 13036661 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00845 65 652 Receptor kinase-like Gene Family AT3G51740 68.013 0.0 739
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vimu9g00845 PK_Tyr_Ser-Thr 1.8e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00845 - - gmx:100799290 1010.36