Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00803 ATGCGAAAGTCCTTCAAGGATTCCCTCAAAGCTCTTGAAGCTGACATTCTATTTGCCAATACTCTTGCTTCTGATTATCCAAGAGAAAGGGATGGGGCCTGCTTACAGATGAGATTGTCTTATAGTCCAGCTGCTCAATTCTTTCTTTTTCTGGTTCAGTGGACTGACTGTCATCTTGCTGGAGCCTTGGGATTGCTTAGAGTTCTCATATACAAGGTATATGAGGATGGGAAGACAACCATGTCCATTTATGAGAGAAAAACCAGTCTGAAGGATTTCTATGGTGTGATCTTTCCCTCTTTACTTCAACTCCACAGAGGAATCACTGATGTAGAAGAAAGAAAACAGAAAGATTTATTTGCTAAAAAGTACATGCACAAAGATATAGTAAGAAAAGGAAAACTATCTGAAATTGATATTGAGAGAGAAGAAGAATGTGGTATTTGCATGGAGATGAACAACAAGGTTGTCTTGCCCAATTGCAACCACACTTTGTGTATGAAATGCTACAGGAACTGGCATTCAAGATCTCAATCTTGCCCTTTCTGTCGGGATAGTCTTCAAAGAGTAAATTCTGGTGACCTTTGGATCTACTTGAACAGCAATGAGATAAATGACTTGGCTTCAATCAACAAGGAAAATCTAAAAAGACTATTTGCATATGTTGACAAGTTGCCTCTGATTGTGTCAGATCCTTCGCTAATGTCTTATCCTCAGCGCTAA 723 0.3914 MRKSFKDSLKALEADILFANTLASDYPRERDGACLQMRLSYSPAAQFFLFLVQWTDCHLAGALGLLRVLIYKVYEDGKTTMSIYERKTSLKDFYGVIFPSLLQLHRGITDVEERKQKDLFAKKYMHKDIVRKGKLSEIDIEREEECGICMEMNNKVVLPNCNHTLCMKCYRNWHSRSQSCPFCRDSLQRVNSGDLWIYLNSNEINDLASINKENLKRLFAYVDKLPLIVSDPSLMSYPQR 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00803 240 SUPERFAMILY RING/U-box 134 189 - -
Vimu9g00803 240 SMART ring_2 146 183 IPR001841 -
Vimu9g00803 240 Pfam Zinc finger, C3HC4 type (RING finger) 143 190 - -
Vimu9g00803 240 ProSitePatterns Zinc finger RING-type signature. 161 170 IPR017907 -
Vimu9g00803 240 PANTHER RING FINGER PROTEIN 41, 151 3 236 - -
Vimu9g00803 240 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 124 215 IPR013083 -
Vimu9g00803 240 ProSiteProfiles Zinc finger RING-type profile. 146 184 IPR001841 -
Vimu9g00803 240 FunFam RING/U-box superfamily protein 127 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00803 Vimu-Chr9 12555652 12559739 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00803 94 184 C3H Transcription Factor Family AT5G01960 31.250 4.19e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00803 K25840 - pop:7466068 403.675