Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00801 ATGGCAGGTCAAGAGTTTGCAACTGAGAACTTCAATCCAAATGATACCAAGGGAAAGACCATTACTTGCAAAGCTGCTGTTGCATATGGTCCTGGAGAACCCTTTGTGGTCGAACGTGTTCTTGTCCATCCTCCTCAGAAAATGGAGGTTCGAATCAAGATCCTCTTCACTTCAATCTGTCATACTGATCTCGGTGCTTGGCAAGGCGAGAATGAGGCTGCACGTTTTTATCCTCGGATTTTCGGCCATGAAGCTTCTGGGATTGTGGAGAGTGTGGGAGAAGGTGTGAATGAGATGAAAGAAGGAGATTTGGTGATACCAATATTCAATGGGGAATGTGGGGATTGCAAATATTGCAAGAGTGAGAAGACGAACAAGTGTGAGAGATTTGGGGTGAGTATTATGAAGAAGGAGATGGATTGTGGTGGCACAAGATTTTCTACAATGGATAGAAAACCCATCTTCCATTTTTTGAACACTTCAACTTTCACAGAGTACACAGTGCTGGATTCAGCATGCGTCGTTAAGATTCACGCTAATGGCGATTGGGAGTTCAACCCCTTCATCAAAACACTCACCTTGCTTAGTTGTGGTGTCTCTACGGGTGTTGGAGCTGCTTGGAACACAGCAAATGTACATTCTGGTTCAACTGTAGCTGTCTTTGGTTTAGGCGCTGTGGGTCTTGCTGTTGCAGAGGGTGCACGAGCCAGAGGTGCATCCAAAATAATAGGAGTGGATCTCAACCCTGAGAAATTCATCAAAGGCCGTGCAATGGGCATCACTGACTTCATCAATCCAAGGGACGATGAGAGGCCAGTATATGAGAGGATCAGAGACATGACTGATGGGGGCGTGCACTATAGTTTTGAATGTGCTGGAAATTTGAATGTTCTAAGGGATGCCTTCTTGTCAGCTCATGAGGGTTGGGGGTTGACTGTGGTATTAGGGGTTCATACATCACCAAAACTGCTTCCAATCCACCCAATGGATTTGTTCGAAGGTCGGAGAATTGTAGGATCGGTTTTTGGAGGCTTCAAAGGGAAGACTCAATTACCACATTTTGCCAAAGAATGCATGGATGGACTGGTGAAGTTAGATGGTTTTATCACTCATGAGCTTCCACTGGAGGAGATAAACCAGGCCTTTGATCTTTTGATTGCTGGAAAGTCTCTAAGATGTCTTCTATGCTTCTAA 1194 0.4497 MAGQEFATENFNPNDTKGKTITCKAAVAYGPGEPFVVERVLVHPPQKMEVRIKILFTSICHTDLGAWQGENEAARFYPRIFGHEASGIVESVGEGVNEMKEGDLVIPIFNGECGDCKYCKSEKTNKCERFGVSIMKKEMDCGGTRFSTMDRKPIFHFLNTSTFTEYTVLDSACVVKIHANGDWEFNPFIKTLTLLSCGVSTGVGAAWNTANVHSGSTVAVFGLGAVGLAVAEGARARGASKIIGVDLNPEKFIKGRAMGITDFINPRDDERPVYERIRDMTDGGVHYSFECAGNLNVLRDAFLSAHEGWGLTVVLGVHTSPKLLPIHPMDLFEGRRIVGSVFGGFKGKTQLPHFAKECMDGLVKLDGFITHELPLEEINQAFDLLIAGKSLRCLLCF 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00801 397 Pfam Zinc-binding dehydrogenase 225 345 IPR013149 -
Vimu9g00801 397 FunFam Alcohol dehydrogenase 6 26 214 - -
Vimu9g00801 397 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 82 96 IPR002328 GO:0008270|GO:0016491
Vimu9g00801 397 SUPERFAMILY GroES-like 16 184 IPR011032 -
Vimu9g00801 397 Pfam Alcohol dehydrogenase GroES-like domain 49 146 IPR013154 -
Vimu9g00801 397 FunFam S-(hydroxymethyl)glutathione dehydrogenase 202 340 - -
Vimu9g00801 397 Gene3D - 26 392 - -
Vimu9g00801 397 SUPERFAMILY GroES-like 347 397 IPR011032 -
Vimu9g00801 397 PANTHER ALCOHOL DEHYDROGENASE 18 394 - -
Vimu9g00801 397 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 193 361 IPR036291 -
Vimu9g00801 397 Gene3D - 202 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00801 Vimu-Chr9 12488249 12502895 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00801 49 386 Monolignol Biosynthesis Gene Families AT2G21890 24.646 9.84e-13 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00801 K00001 - gmx:100787307 677.167