Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00780 ATGGAAATCAGGGTGACTACATTGGAAAACAAGGTGAGTGCATTGGAGGGAAGATTTGTTTCCATGGAGGCAACGTTGGAGGAAATTCGAGCGGAACGAAACATTAATCGCGATTGTGGGAGAAGAAGGAACCAGCGTCGGAGCTCCGAAGAAAGTCGTGATTCCGTCAACGTTGAACGGCGACCACCAGAGAAAGGAGACGTGCAACGTAGCGGGATGAAGCGCGTTGAACTACCAACGTTAGGAGTGGACCCCATGGGCTGGATCGCAAAGGCAGAGAAATTTTTCGATCTACAAAACGTGACGGAGAGGAAGAAGATGAAGCTGAAGACCAGACATCCGAATTGGAAGATGTTCACGGAAGCGCTGACGCGGAGGTTCGGCGGACTGGATCGAGGCACCGTTCTTGAGAAGTTGGCGACGGTGCAGCAGAAGGGGAGCGTCGATGAATTAAACCAGGAGTTTGAAATTTTGGTGGCACAAGCATCGGGCGTGGGTGAGAGGATGGCAAAAGTGCGACAGGAGGGATATGTCAATGCCGACGGAGGGCAGAAAGACGAAGAAGATGAGAAAATTAACAATCTCTTGGATATGGAGAATATGGGTAAAGGAATGGGAGAAACGGAGCTGAAGTTGAGCACACATCAACCGCCTTTGTTGTTTCGGTACCGTCTCTTTCACATGGATCGCACAATTAAGGGCACTCTTTTGGTTAAGAGGAAGCTTCTTCCTAGGATAATACATGTTAGGCATTCAATGATTAAAGCTTTACTAGAGAGTAATTTGGAAGATGCAAATCATGTTTTCTCCAACAAGCGCGTTGCACTCAGAGCATCCCTTAATAATGGCATCATTGATGAATACATTGTGGCAAAAATGATTTTATATGGAATTCCTCTGGATGAGCCATTTTTGCAACATCATCCGTCTATACTTGCAAGGGAGGAACACAAGAAGCTTAGAGGAGGAAAGCTATATATGCCTGAATGTTTCTATTTAATGGGGACTGTAGATCCCACTAGATGCCTAGAGAAGGATCAAGATTGTATAATACATGAGAATGGCCAAATTACCGGGGATGTGTTGGTCTATAGAAATCCAGGTTTACATTTTAGCGACATTCACATAATGTGTGCCACATATGTGGATAACTTAGAATCTTTTGTTGGACACAGCAAGTATGCAAATTTTTTCCCATGTGTTTGGACTCGCTCAGTGGCAGATGAAATTGCTGGAGGTGATTACAAAGCAATCGTGCAGAGTCTCAATCCACTGATTCCACCCATATTTTCTTTTTATGAGAGTGTCTGTTGTTCTGAATGGAATGCAGCCATGGAAAGGCTAACTGGTGAAATATTTGGAAGCTTTTGTCGACTAAAAGGTCAATATACCCTGGCTAATTTTATGATTTTAATATACCGTGGAATAAGTGGTCAAGATTCTGAGAAGTTACCATTTGGATTTTTTGATAGAAATGGAGAAATTGTTGAAAGTTATATAACAGCAAACAAGAGAATTGATGCTGGTGGGAATATACATGGTTGTTTTTGCTTCTTGCAGGTTGTAACGCCAGACCTGAATCAGTCCTCTGAAGAACACAAGCTAATAGGCAGAGAAAACATTTTTGAATCCAAAGAGTTAGCTTATATATTACAAGTGATTGAAACCATGACTCTGGCTTGGAGATTGAGCCAAGCAAAATTTGTGGAGGGGGAGATAGAAGAGAGTGACTTAACTCCCAATAAAAAGGGACTTGTAGAGGGGAGAGAGTTGTTGGGAGCATTGAAAGACATCAAAGATCATCTTCTCCAGGCTTATAGTTTTGAAAAAGAGGTGACCAGAATGTGGGAAGTTAATATAATCAAAGAAGAATGGAAGACATTGGAGGAGGATTTGCCACCACCCAAGCCTCCAGACCAGAATTTGGAGGGCACCATCTGGAAAGAGGAGCATTACCTCAAATAA 1965 0.4295 MEIRVTTLENKVSALEGRFVSMEATLEEIRAERNINRDCGRRRNQRRSSEESRDSVNVERRPPEKGDVQRSGMKRVELPTLGVDPMGWIAKAEKFFDLQNVTERKKMKLKTRHPNWKMFTEALTRRFGGLDRGTVLEKLATVQQKGSVDELNQEFEILVAQASGVGERMAKVRQEGYVNADGGQKDEEDEKINNLLDMENMGKGMGETELKLSTHQPPLLFRYRLFHMDRTIKGTLLVKRKLLPRIIHVRHSMIKALLESNLEDANHVFSNKRVALRASLNNGIIDEYIVAKMILYGIPLDEPFLQHHPSILAREEHKKLRGGKLYMPECFYLMGTVDPTRCLEKDQDCIIHENGQITGDVLVYRNPGLHFSDIHIMCATYVDNLESFVGHSKYANFFPCVWTRSVADEIAGGDYKAIVQSLNPLIPPIFSFYESVCCSEWNAAMERLTGEIFGSFCRLKGQYTLANFMILIYRGISGQDSEKLPFGFFDRNGEIVESYITANKRIDAGGNIHGCFCFLQVVTPDLNQSSEEHKLIGRENIFESKELAYILQVIETMTLAWRLSQAKFVEGEIEESDLTPNKKGLVEGRELLGALKDIKDHLLQAYSFEKEVTRMWEVNIIKEEWKTLEEDLPPPKPPDQNLEGTIWKEEHYLK 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00780 654 PANTHER RNA-DEPENDENT RNA POLYMERASE 257 415 IPR007855 GO:0003968
Vimu9g00780 654 MobiDBLite consensus disorder prediction 40 72 - -
Vimu9g00780 654 Coils Coil 12 32 - -
Vimu9g00780 654 MobiDBLite consensus disorder prediction 40 73 - -
Vimu9g00780 654 Pfam RNA dependent RNA polymerase 257 415 IPR007855 GO:0003968
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00780 Vimu-Chr9 12188219 12190474 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00780 413 587 Histidine Kinase Gene Family AT4G16250 46.809 4.18e-46 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00780 K11699 - var:108339273 426.017