Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00778 AAGGAGAACCTGTGCCTCTATGGACATCCGAATGAGACTTGGGAGGTGACTTTGCCAGCGGAGGAAGTTCCGCCGGAGCTTCCGGAGCCTGCTCTTGGAATCAATTTTGCAAGGGATGGCATGAACCGCAGGGACTGGCTTTCTCTGGTTGCCGTGCACAGTGACTCGTGGCTGCTTTCTGTGGCTTTTTATCTTGGAGCTCGTCTTAACCGCAATGAAAGGAAGCCGAGATCAAGTGATGGGCAAGTTAAAAGCAACCCGAAGTTTGCAGACGAAGGATATGAAGAGGAGGATGACGAGCATAGTGAAACCCTGTGTGGGAGCTGTGGCGGAAATTACAATGCAGATGAATTTTGGATTGGTTGTGATATATGTGAGAGGTGGTTCCATGGGAAATGTGTGAAGATTACTCCTGCAAAAGCTGAGAGCATAAAGCAATACAAATGTCCATCATGCAGCTTGAGGCGGGGCAGGCCCTAA 480 0.4958 KENLCLYGHPNETWEVTLPAEEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLLSVAFYLGARLNRNERKPRSSDGQVKSNPKFADEGYEEEDDEHSETLCGSCGGNYNADEFWIGCDICERWFHGKCVKITPAKAESIKQYKCPSCSLRRGRP 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00778 159 ProSitePatterns Zinc finger PHD-type signature. 106 152 IPR019786 -
Vimu9g00778 159 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 153 IPR013083 -
Vimu9g00778 159 MobiDBLite consensus disorder prediction 73 99 - -
Vimu9g00778 159 SUPERFAMILY FYVE/PHD zinc finger 94 157 IPR011011 -
Vimu9g00778 159 ProSiteProfiles Zinc finger PHD-type profile. 103 155 IPR019787 -
Vimu9g00778 159 SMART PHD_3 105 153 IPR001965 -
Vimu9g00778 159 PANTHER CPG BINDING PROTEIN 1 75 IPR045104 GO:0006355|GO:0042393
Vimu9g00778 159 FunFam PHD finger alfin-like protein 98 154 - -
Vimu9g00778 159 Pfam Alfin 1 75 IPR021998 GO:0006355|GO:0042393
Vimu9g00778 159 Pfam PHD-finger 106 153 IPR019787 -
Vimu9g00778 159 CDD PHD_AL_plant 105 155 IPR044104 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00778 Vimu-Chr9 12158667 12160639 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00778 2 158 Alfin-like Transcription Factor Family AT5G05610 65.306 6.13e-70 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Vimu9g00778 Alfin 3.1e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00778 K26274 - gmx:100779170 304.293
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g04491 6 50606551 50608607 Vimu9g00778 9 12158667 12160639 PCT