Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00777 GTTGTTCTTCCGGCTGAGGCAAATTGGAAAATGGGAGTGGATTATTACAAACTTCTTCAGGTAGATCGAAGTGCCAGCGATGAGGATCTCAAGAAAGCTTATCGAAGGCTTGCTATGAAGTGGCACCCTGATAAGAACCCTAACAATAAAAAGGATGCTGAAGCCAAATTCAAGCAAATCTCGGAAGCTTATGATGTTTTGAGTGATCCACAAAAGAGGGCAGTGTATGATCAGTATGGTGAGGAGGGATTGAAAGGGCAGGTGCCACCCCCGGGTGCTGGTGGATTTTCCGGTGGCACTGATGGTGGATCAACGACTTTCCGGTTCAACCCTAGAAGTGCAGATGATATATTTTCGGAGTTCTTTGGGTTTTCGAGTCCCTTTGGAATGGGGGATATGGGTGGCCGTGCCGGTCCATCTGGCTTTCCCAGATTTGGGGATGACATCTTTACCTCTTTTAGTAGGAATGCGGCTGGAGAAGGCTCTGTCAATGTGCCAAGGAAAAGTGCACCTATTGAGAGAACCTTGCAATGCAGTTTGGAGGATTTATACAAAGGGACTACCAAAAAAATGAAGATTTCCAGGGATGTGATTGATGCTAGTGGGAGGCCCACCACTGTAGAGGAAATTCTAACCATTGAGATCAAGCCAGGTTGGAAGAAAGGAACAAAAATAACTTTTCCAGAGAAGGGAAACGAACAAAGAGGAGTTATACCCGCTGATCTTGTTTTTATTATTGATGAAAAACCGCATGGTGTCTTCAAAAGGGATGGCAATGATCTTGTTGTCACACAGAAAATATCCCTTGTTGAAGCTCTGACTGGTTACACCGCACAGCTGACAACTCTTGATGGCCGGAATCTTACCGTAACCACCACCTCCATCATCAGTCCGACATACGAAGAAGTGATCAAAGGAGAGGGTATGCCCATTCCCAAGGAACCTTCCAAAAGGGGAAACATGAGGATCAAGTTCAATATCAAGTTCCCCTCTAGACTTACATCAGAGCAGAAAACTGGCATTAAACGATTATTGACATCTCCATAA 1047 0.4499 VVLPAEANWKMGVDYYKLLQVDRSASDEDLKKAYRRLAMKWHPDKNPNNKKDAEAKFKQISEAYDVLSDPQKRAVYDQYGEEGLKGQVPPPGAGGFSGGTDGGSTTFRFNPRSADDIFSEFFGFSSPFGMGDMGGRAGPSGFPRFGDDIFTSFSRNAAGEGSVNVPRKSAPIERTLQCSLEDLYKGTTKKMKISRDVIDASGRPTTVEEILTIEIKPGWKKGTKITFPEKGNEQRGVIPADLVFIIDEKPHGVFKRDGNDLVVTQKISLVEALTGYTAQLTTLDGRNLTVTTTSIISPTYEEVIKGEGMPIPKEPSKRGNMRIKFNIKFPSRLTSEQKTGIKRLLTSP 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00777 348 Pfam DnaJ domain 14 77 IPR001623 -
Vimu9g00777 348 ProSitePatterns Nt-dnaJ domain signature. 57 76 IPR018253 -
Vimu9g00777 348 PRINTS DnaJ domain signature 72 91 IPR001623 -
Vimu9g00777 348 PRINTS DnaJ domain signature 52 72 IPR001623 -
Vimu9g00777 348 PRINTS DnaJ domain signature 16 34 IPR001623 -
Vimu9g00777 348 PRINTS DnaJ domain signature 34 49 IPR001623 -
Vimu9g00777 348 Gene3D - 171 249 - -
Vimu9g00777 348 FunFam Dnaj homolog subfamily b member 168 249 - -
Vimu9g00777 348 FunFam DnaJ subfamily B member 13 251 331 - -
Vimu9g00777 348 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 11 345 - -
Vimu9g00777 348 ProSiteProfiles dnaJ domain profile. 14 80 IPR001623 -
Vimu9g00777 348 SUPERFAMILY Chaperone J-domain 13 107 IPR036869 -
Vimu9g00777 348 SUPERFAMILY HSP40/DnaJ peptide-binding domain 253 339 IPR008971 GO:0006457|GO:0051082
Vimu9g00777 348 SMART dnaj_3 13 72 IPR001623 -
Vimu9g00777 348 SUPERFAMILY HSP40/DnaJ peptide-binding domain 172 251 IPR008971 GO:0006457|GO:0051082
Vimu9g00777 348 CDD DnaJ 14 69 IPR001623 -
Vimu9g00777 348 Gene3D DnaJ domain 12 133 IPR036869 -
Vimu9g00777 348 MobiDBLite consensus disorder prediction 82 107 - -
Vimu9g00777 348 CDD DnaJ_C 170 333 - -
Vimu9g00777 348 Pfam DnaJ C terminal domain 172 330 IPR002939 -
Vimu9g00777 348 Gene3D - 251 331 - -
Vimu9g00777 348 FunFam DnaJ subfamily B member 13 13 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00777 Vimu-Chr9 12118187 12121767 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00777 15 79 C2H2 Transcription Factor Family AT1G74250 37.681 2.09e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00777 K09510 - gmx:100777607 603.208