Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00725 ATGGCTCTGATATTGGATCAACAATCAAACTTCAAGCACTTTTGTAAGATTTGCAAGAAAGGTTTTGGCTGTGGAAGAGCTTTGGGAGGACACATGAGGGCTCATGGTATAGGAGATGAAGGTGGTCAAATGGATGATGATGATCAAGCTAGTGATTGGGAAGATAGGTTGGGTGGGAATGTTCCACCAAGCAACAAACGCATGTATGCTTTGAGAACAAACCCTAATAGGCTAAAGAGTTGTAGGGTATGTGAGAATTGTGGCAAGGAGTTTTTGTCGTGGAAATCTTTCCTTGAACATGGAAAATGCACCTCCGAGGATGCTGACTCCTTTGTCTCCTCTCCGGGTTCCGACGCCGATGACGGTGGCATCGCTGGTGGCGACCGAAGAGGATGTGGATGGTCCAAAAGAAAAAGGTCTTTGAGAACTAAGGTTGGTAGCTTCAATTACAATTGCCCATCCAGCGAGGAAGAAGACCTAGCAAATTGTTTAATAATGTTGTCCAATGGCACTGTAGATCCTCTTGGGCCCGAGCCTGAAGAATCCTGTGCATCCGCTAGCAAGGAGGAAGAACAACGGCGAAATCCTATGAATTTCATTGCACCATTGTCGTACAAAGTTAATAATAACAACAACAATATTCACAACATCAACAACCTCAGAAAATCGAAAGTTCATGAATGTTCAATTTGCCATAGGAGTTTCTCTTCGGGACAAGCTCTTGGAGGACACAAAAGGTGTCATTGGATCACATCAAATGCACCCGACACCTCGACGTTAACGAGATTTCAACAGTTTCACGACCACTTGGATCAAATACCCAAGTTTGACACCTCTTCTGAGCCTCTTGATCTAAAGTTAGACCTTAACCTTCCTGCACCTTCCAATGACCTTGCAAGAAGGAATGTTTCTACAGAAATTTACTTGCAGCCTTGGGTTACATCAAAGGATGTTAAAGATGATAACAATACCCAATGTCAAAGTCTCCATCACAATAACAACAATGTTGACATTGACAACAACAACGACGAAGAAGATAAAAACACAAATAACCCAATGCAAAATGTGGATAATGAGACTGATAATAAGATCAAGTTGGCCAAACTAAGTGAGCTAAAAGACATGAACGTTGGAGGCACTTCTTCACCATGGTTGCAGGTGGGAATCGGTTCGGCTGCCACTGACGTCACAACTGATAACTCCTGA 1206 0.4303 MALILDQQSNFKHFCKICKKGFGCGRALGGHMRAHGIGDEGGQMDDDDQASDWEDRLGGNVPPSNKRMYALRTNPNRLKSCRVCENCGKEFLSWKSFLEHGKCTSEDADSFVSSPGSDADDGGIAGGDRRGCGWSKRKRSLRTKVGSFNYNCPSSEEEDLANCLIMLSNGTVDPLGPEPEESCASASKEEEQRRNPMNFIAPLSYKVNNNNNNIHNINNLRKSKVHECSICHRSFSSGQALGGHKRCHWITSNAPDTSTLTRFQQFHDHLDQIPKFDTSSEPLDLKLDLNLPAPSNDLARRNVSTEIYLQPWVTSKDVKDDNNTQCQSLHHNNNNVDIDNNNDEEDKNTNNPMQNVDNETDNKIKLAKLSELKDMNVGGTSSPWLQVGIGSAATDVTTDNS 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00725 401 ProSitePatterns Zinc finger C2H2 type domain signature. 228 248 IPR013087 -
Vimu9g00725 401 Gene3D Classic Zinc Finger 11 103 - -
Vimu9g00725 401 MobiDBLite consensus disorder prediction 172 193 - -
Vimu9g00725 401 ProSitePatterns Zinc finger C2H2 type domain signature. 15 35 IPR013087 -
Vimu9g00725 401 MobiDBLite consensus disorder prediction 109 128 - -
Vimu9g00725 401 SMART c2h2final6 13 35 IPR013087 -
Vimu9g00725 401 SMART c2h2final6 226 248 IPR013087 -
Vimu9g00725 401 ProSiteProfiles Zinc finger C2H2 type domain profile. 226 248 IPR013087 -
Vimu9g00725 401 Pfam C2H2-type zinc finger 225 250 - -
Vimu9g00725 401 Pfam C2H2-type zinc finger 13 35 - -
Vimu9g00725 401 MobiDBLite consensus disorder prediction 38 59 - -
Vimu9g00725 401 PANTHER OS02G0659100 PROTEIN 2 204 - -
Vimu9g00725 401 MobiDBLite consensus disorder prediction 328 360 - -
Vimu9g00725 401 SUPERFAMILY beta-beta-alpha zinc fingers 13 248 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00725 Vimu-Chr9 11098027 11099505 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00725 134 249 C2H2 Transcription Factor Family AT3G49930 35.971 1.74e-17 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00725 - - gmx:100811426 600.512