Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00724 ATGAGGTCTCACATGATGAACCTACCTGTTCCTCCCAAAGAGAGCGAGTTCGTTCCGGTTCAACTCAGTTTTGAGGCCGAGTCATCTCCTTCTCAATCCTCTTCTTCCTTCTACGGTCTCAGAGAGAACCCCAAGAAAAGTTTCCGTTTTGCAGATCCTGAAGATAGAGAGAGCGAGACGGAGTCATCCAAGAACCCGACTCGAAAACGATCCAAGAGGGCGTGGCAACTCGGAGAACCCGTGAAAAAGATGAAACTCTGTGGGAACAATAACAAGAACGAATCTGCGAGTTCTGCTTCCGATACCACCGCGGAAGAAGCCGTAGCATTTTGTCTAATGATGCTGTCTCGTGACAGATGGAAGAAATATGATGATCATAAAAACATACAGCAGTATGATGATGAGGAGATGAAATCTGTTAAGAGGAGTAACAAGGTGCGTGGGAGGTACAAATGCGAAACGTGTGACAAGGTGTTTCGATCTTACCAAGCTCTTGGTGGGCACCGAGCGAGTCACAAGAAGAAAGCCGAACTTGAACTAGAGCATGTTGCTGTGTCGGAGAAGAAAATCCACGAATGCCCGGTTTGTTCTAGAGTATTTGGTTCAGGTCAAGCACTCGGTGGACACAAGAGAACACATGTTATAGGTTCTTCTGCAACTCATACCACTGCTTCTGTCAGAGTTGGAGACAGTTTGATAGATCTTAATCTCCCTGCTCCAGTAGACGATGATGAAGACATTAGCCAGTTCGATCACTCTGCTCTTTCTGATGCGGAGTTTGTCAAAGAGTGA 792 0.4634 MRSHMMNLPVPPKESEFVPVQLSFEAESSPSQSSSSFYGLRENPKKSFRFADPEDRESETESSKNPTRKRSKRAWQLGEPVKKMKLCGNNNKNESASSASDTTAEEAVAFCLMMLSRDRWKKYDDHKNIQQYDDEEMKSVKRSNKVRGRYKCETCDKVFRSYQALGGHRASHKKKAELELEHVAVSEKKIHECPVCSRVFGSGQALGGHKRTHVIGSSATHTTASVRVGDSLIDLNLPAPVDDDEDISQFDHSALSDAEFVKE 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00724 263 SMART c2h2final6 191 213 IPR013087 -
Vimu9g00724 263 SMART c2h2final6 150 172 IPR013087 -
Vimu9g00724 263 SUPERFAMILY beta-beta-alpha zinc fingers 149 213 IPR036236 -
Vimu9g00724 263 Gene3D Classic Zinc Finger 147 213 - -
Vimu9g00724 263 ProSitePatterns Zinc finger C2H2 type domain signature. 193 213 IPR013087 -
Vimu9g00724 263 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 262 IPR044303 GO:0006355
Vimu9g00724 263 MobiDBLite consensus disorder prediction 45 79 - -
Vimu9g00724 263 Pfam C2H2-type zinc finger 149 175 - -
Vimu9g00724 263 Pfam C2H2-type zinc finger 191 213 - -
Vimu9g00724 263 MobiDBLite consensus disorder prediction 22 41 - -
Vimu9g00724 263 MobiDBLite consensus disorder prediction 21 80 - -
Vimu9g00724 263 ProSitePatterns Zinc finger C2H2 type domain signature. 152 172 IPR013087 -
Vimu9g00724 263 ProSiteProfiles Zinc finger C2H2 type domain profile. 191 213 IPR013087 -
Vimu9g00724 263 ProSiteProfiles Zinc finger C2H2 type domain profile. 150 177 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00724 Vimu-Chr9 11084782 11085786 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00724 1 245 C2H2 Transcription Factor Family AT3G60580 46.296 1.92e-59 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu9g00724 zf-C2H2_6 9.3e-12 CL0361