Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00714 CTTCGGCGGCGCATTTTCAGACCAATAACCTGGCCGTCAGTTTCCACCATGCGGAGCTTCAGGATGAGAACCCTGTTGTCCCGTGTGAAGAGGAGAACAAAGAAAACTATCAGAAACCGAAAAATAACCATAGGAAACTGCATTTCCATATCAAAAGAGTTAGCACGTCTAGTGGAACAAAAACATGAAGAAGAAGAAGAAGATGTTGTTGAGGAAGGTTTCAGAATCAAAAGTTCTGCTCCATCACACACTCACGGTGTTCAGCCCTTGGGAAATCTCTATCTCAACTCCAGTTCCGTTAACTCTAGAGACACCGGCTTAGGTAATCTTCATACTCTTTCGGATGAGCTTGTTCTTGACATGCTTGGGTTTTTGGATGCTTCTTCGTTGGGGGTTTTGGCCGCTGTGAGCAAGTCTTTCTACGTGTTCACCAACCATGAACCCCTTTGGAAGAATCTCGTGTTGGAGAACTTTCTAAGTGGGTTTCAGTACAAAGGGTCTTGGAAATCTACTTATGTATCGGCCTGTTACCCTTCATTTGGTAACTCTGCTATTGCTCTTGGGGGTTTCAAAGTTAGAGACTTTTACTCCGATTATCTTTTCCAGAGTTGGCTCTGTGCTAACCTTGAAATGAAGCCTGAGTGGTTGGAGAGGGATAATGTGGTTCGAAAGAGGGGAATTTCGGTTGAGGAGTTTGTGTTGAATTTTGAGGAGCCTAATAGGCCGGTGTTATTGGAAGGGTGTATTGATAATTGGAGTGCATTGGGAAATTGGGATAGGGATTATTTGGTAAGATTGTGTGGTGATGTTAAGTTTTCAGTTGGGCCAGTGGAGATGAAACTTGGAGATTACTTTGGATACTCTGATCATGTTAGAGAGGAAAGGCCTCTATATTTGTTTGATCCTAAATTTGCTGAAAAAGTTCCAAAGTTGGGTGATGAATATGAAGTTCCAGTGTACTTTAGGGAAGATTTGTTTGGTGTTTTGGGTAATGAGAGGCCAGACTACAGGTGGATTATTATTGGACCTGCAGGGTCTGGATCCTCTTTCCACGTTGATCCAAATTCGACCTCAGCTTGGAATGCAGTGATCAAGGGATCCAAGAAATGGATTTTGTTTCCTCCTAATGTGATTCCGCCTGGTGTTCATCCTAGTCCTGATGGGGCCGATGTTGCATCTCCTGTTTCAATAATTGAATGGTTCATGAACTTCTATGGTGCAACCAAAAATTTGAAAAAGAAGCCAATTGAGTGTGTGTGTAAAGCTGGAGAGCTCATCTTTGTGCCTAGTGGATGGTGGCATTTGGTGATCAACCTGGAGGAGTCTATCGCCATAACCCAAAACTATGTTAGTAGAAGAAATTTGGTAAAGGTCTTGGATTTTCTTAAAAGGCCAAATGCTAGCACACTGGTATCTGGAACAAGGGATCGAGTGAATTTGTATGATAAGTTTAAGAATGCTATTGAGGCTTCTTTTCCAGGAGAAATTGATGAATTGACTCGGAAAGAAGAGAGAAAGATCCAGCAAAGGAAACTTTCCTTTTGGGACTCTGTCGCAGATGCTAATGCAGGAGCTTTCAAGTTTTCTTTCTAG 1593 0.425 LRRRIFRPITWPSVSTMRSFRMRTLLSRVKRRTKKTIRNRKITIGNCISISKELARLVEQKHEEEEEDVVEEGFRIKSSAPSHTHGVQPLGNLYLNSSSVNSRDTGLGNLHTLSDELVLDMLGFLDASSLGVLAAVSKSFYVFTNHEPLWKNLVLENFLSGFQYKGSWKSTYVSACYPSFGNSAIALGGFKVRDFYSDYLFQSWLCANLEMKPEWLERDNVVRKRGISVEEFVLNFEEPNRPVLLEGCIDNWSALGNWDRDYLVRLCGDVKFSVGPVEMKLGDYFGYSDHVREERPLYLFDPKFAEKVPKLGDEYEVPVYFREDLFGVLGNERPDYRWIIIGPAGSGSSFHVDPNSTSAWNAVIKGSKKWILFPPNVIPPGVHPSPDGADVASPVSIIEWFMNFYGATKNLKKKPIECVCKAGELIFVPSGWWHLVINLEESIAITQNYVSRRNLVKVLDFLKRPNASTLVSGTRDRVNLYDKFKNAIEASFPGEIDELTRKEERKIQQRKLSFWDSVADANAGAFKFSF 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00714 530 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 107 528 - -
Vimu9g00714 530 FunFam F-box protein At1g78280 201 451 - -
Vimu9g00714 530 Gene3D Cupin 202 451 - -
Vimu9g00714 530 SUPERFAMILY F-box domain 102 174 IPR036047 GO:0005515
Vimu9g00714 530 Coils Coil 47 67 - -
Vimu9g00714 530 Gene3D - 98 178 - -
Vimu9g00714 530 Pfam Cupin-like domain 231 449 IPR041667 -
Vimu9g00714 530 SMART cupin_9 297 466 IPR003347 -
Vimu9g00714 530 ProSiteProfiles JmjC domain profile. 306 466 IPR003347 -
Vimu9g00714 530 ProSiteProfiles F-box domain profile. 107 153 IPR001810 GO:0005515
Vimu9g00714 530 SUPERFAMILY Clavaminate synthase-like 223 464 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00714 Vimu-Chr9 10685279 10687866 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00714 101 455 Glycosyltransferase AT1G78280 39.560 1.05e-77 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vimu9g00714 Cupin_8 1.3e-22 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00714 - - gmx:100782241 937.562