Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00659 ATGGCATCACCATCATCATCTTCATCTTCATTTTCCTTGCTGATATCCCTTGTACTTATTCCCTTGCTATTTTCCTCTGTGGCCTTCTCTTACTCATTGACAGATATTCAATCATGGTGCAACCAAACCCCTTACCCTCAACCTTGTGAGTACTACTTGACCAACCATGCCTTCAACACACCTATCAAAAGCAAATCCGATTTTCTCAAAGTTTCCCTTCAACTTGCCTTAGATAGAGCAGAAAGGGGTCAACTAAACACGCATTCAATAGGGCCAAAGTGCCGCAACGAGCATGAAAAATCTGCATGGAACGATTGCATTCAACTCTACGAGTACACCATTCAAAGACTCAACAAAACTCTTGATTCCCACACCAAATGCACACAAACTGATGCACAAACATGGCTCAGCACAGCCCTCACAAACCTCGAGACATGTAGAATCGGCTTCTATGAACTTGGTGTCACAGATTACATCCTACCCTTATTATCCAATAATGTCACAAAGTTGTTGAGCAACACCCTCTCTCTCAACAAGGACCCCAACAGCCAGTTCAAACCACCTAGTACCCAAGAGGGATTCCCTACATGGGTGAAACCAGGTGATAGAAAGTTGCTGCAATCATCTTCAGCAGCTTCTAAGGCTAATGTGATTGTGGCCAAAGATGGTTCTGGAAAGTACACAACAGTGAAAGCTGCTGTTGATGCTGCTCCAAGTAGCAGTGGAAGGTATGTGATATATGTGAAGAGTGGAGTATACAATGAACAAGTTGAGGTTAAATCAAAGAATATCATGTTGGTTGGAGATGGAATTGGAAAAACCATAATCACAGGTAGCAAAAGTGTTGGAGGAGGCTCCACAACATTCAATTCAGCCACTGTTGCTGCTGTGGGTGATGGATTCATTGCTCAAGACATCACATTCAGGAACACTGCAGGAGCAGCAAATCATCAAGCAGTGGCATTGCGTTCTGGTTCAGATCTTTCAGTATTTTACAGATGCAGTTTTGAAGGTTATCAAGACACATTATATGTTCATTCAGAGAGGCAATTCTACAGAGAATGTGACATATATGGCACAGTGGATTTCATCTTTGGCAATGCTGCTGTGGTTTTGCAAAACTGCAACATATATGCCAGAAGCCCTCCTCAGAAAACAATCACAGTGACTGCTCAGGGTAGAACTGACCCTAACCAGAACACTGGAATCATAATCCACAACTCCAAGGTCACTGGTGCCTCAGGCTTCAACCCTAGTTCTGTGAAATCATACCTTGGCAGGCCCTGGAAGCAGTACTCAAGAACAGTGTTCATGAAGACCTATCTTGACAGTTTGATCAACCCTGCTGGATGGATGGAATGGGATGGTAACTTTGCTTTGGACACTTTGTATTATGCAGAATATGCAAACACTGGTCCTGGCTCCAGCACTGCCAATAGGGTCACTTGGAAGGGTTACCATGTTCTCACAAGCGCATCTCAGGCCACACCTTTCACTGTTGGAAACTTCATTGCTGGCAACTCTTGGATACCTAACACTGGTGTTCCTTTTACCTCTGGACTTTAG 1566 0.4381 MASPSSSSSSFSLLISLVLIPLLFSSVAFSYSLTDIQSWCNQTPYPQPCEYYLTNHAFNTPIKSKSDFLKVSLQLALDRAERGQLNTHSIGPKCRNEHEKSAWNDCIQLYEYTIQRLNKTLDSHTKCTQTDAQTWLSTALTNLETCRIGFYELGVTDYILPLLSNNVTKLLSNTLSLNKDPNSQFKPPSTQEGFPTWVKPGDRKLLQSSSAASKANVIVAKDGSGKYTTVKAAVDAAPSSSGRYVIYVKSGVYNEQVEVKSKNIMLVGDGIGKTIITGSKSVGGGSTTFNSATVAAVGDGFIAQDITFRNTAGAANHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSERQFYRECDIYGTVDFIFGNAAVVLQNCNIYARSPPQKTITVTAQGRTDPNQNTGIIIHNSKVTGASGFNPSSVKSYLGRPWKQYSRTVFMKTYLDSLINPAGWMEWDGNFALDTLYYAEYANTGPGSSTANRVTWKGYHVLTSASQATPFTVGNFIAGNSWIPNTGVPFTSGL 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00659 521 Pfam Plant invertase/pectin methylesterase inhibitor 36 177 IPR006501 GO:0004857
Vimu9g00659 521 ProSitePatterns Pectinesterase signature 2. 357 366 IPR033131 -
Vimu9g00659 521 SMART PMEI_2 31 177 IPR006501 GO:0004857
Vimu9g00659 521 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 35 179 IPR035513 -
Vimu9g00659 521 Gene3D Invertase/pectin methylesterase inhibitor family protein 32 180 IPR035513 -
Vimu9g00659 521 SUPERFAMILY Pectin lyase-like 210 520 IPR011050 -
Vimu9g00659 521 PANTHER PECTINESTERASE 23 511 - -
Vimu9g00659 521 ProSitePatterns Pectinesterase signature 1. 240 259 IPR018040 -
Vimu9g00659 521 NCBIfam pectinesterase inhibitor domain 13 179 IPR006501 GO:0004857
Vimu9g00659 521 FunFam Pectinesterase 210 521 - -
Vimu9g00659 521 Pfam Pectinesterase 216 507 IPR000070 GO:0030599|GO:0042545
Vimu9g00659 521 Gene3D - 210 521 IPR012334 -
Vimu9g00659 521 CDD PMEI-like_3 38 179 - -
Vimu9g00659 521 FunFam Pectinesterase 31 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00659 Vimu-Chr9 8148977 8152770 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00659 14 521 Carbohydrate Esterase AT2G45220 67.843 0.0 736
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00659 K01051 - gmx:100794948 918.687