Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00649 ATGTTGGTGGGGGATGGTATTGGAAAGACTATAATCACAGGTAGCAAAAGTGTAGGAGGGGGCACCACAACCTTTCGTTCAGCCACTGTTGCTGTTGTTGGAGATGGATTTATAGCACAAGACATCACGTTTAGAAACACTGCTCGTGCAGCAAATCACCAAGCTGTTGCATTGCGTTCTGGATCAGACCTATCTGTATTCTATAGATGCAGCTTTGAAGGTTATCAAGACACGCTATATGTGTATTCTGATAGACAGTTCTATAGAGAATGTGACATATATGGCACAGTTGACTTCATCTTTGGTAATGCTGCTGTGGTGTTCCAAAACTGTAATCTATATGCAAGAAACCCTCCAAACAAAGTCAACACAATCACTGCTCAAGGAAGAAGCGATCCAAACCAGAATACTGGCATTTCCATTCACAATTCAAGGGTAACTGCTGCCTCAGATTTGAGTCCTGTTCAAAGCTCAGTTAAGACCTACCTTGGAAGGCCTTGGAAACAGTATTCAAGAACAGTTTTCATGAAGAGTTATCTAGATAGTTTGATCAATGGAGAGGGATGGTTGGAATGGAGTGGTAACTTTGCATTGAGTAGTTTGTACTATGGAGAATACATGAACACAGGACCTGGTTCTTCAATAGCAAACAGAGTTAAATGGTTGGGATATCATGTTATCACAAGCGCTTCTCAAGCCTCACAATTCACTGTTGCCAATTTCATTGCTGGAAACTCCTGGTTACCTGCAACTAGTCTTCCTTTTATCTCTGGTCTTTGA 780 0.4154 MLVGDGIGKTIITGSKSVGGGTTTFRSATVAVVGDGFIAQDITFRNTARAANHQAVALRSGSDLSVFYRCSFEGYQDTLYVYSDRQFYRECDIYGTVDFIFGNAAVVFQNCNLYARNPPNKVNTITAQGRSDPNQNTGISIHNSRVTAASDLSPVQSSVKTYLGRPWKQYSRTVFMKSYLDSLINGEGWLEWSGNFALSSLYYGEYMNTGPGSSIANRVKWLGYHVITSASQASQFTVANFIAGNSWLPATSLPFISGL 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00649 259 ProSitePatterns Pectinesterase signature 2. 93 102 IPR033131 -
Vimu9g00649 259 Pfam Pectinesterase 1 245 IPR000070 GO:0030599|GO:0042545
Vimu9g00649 259 SUPERFAMILY Pectin lyase-like 1 258 IPR011050 -
Vimu9g00649 259 Gene3D - 1 259 IPR012334 -
Vimu9g00649 259 PANTHER PECTINESTERASE 1 251 - -
Vimu9g00649 259 FunFam Pectinesterase 1 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00649 Vimu-Chr9 8035060 8035959 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00649 1 259 Carbohydrate Esterase AT2G45220 76.448 3.84e-145 414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00649 K01051 - gmx:100781697 472.241