Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00646 ATGATGTCTCAGAACAGCACTTACACCAGAGAGGATGCACTCACATGGATAAGTGCTGTGATGACAAATCACAGGACCTGTTTGGATGGTCTGCAAGAAAAAGGGTATGTTGAAGCTCGGATTCTTGATAGAAACTTGACCGTGTCGCTTAAGCAAGCTCTTATTTTGTATTCAAGGAATAAAGTCATAGCCAAAGGACCACCCCTTCAGGGAACAATATCCAAAGGTTCTGGTATTTTAGAATCATGGAGTGAAGCAAGCTATAAGCCAGATTTCACAGTGGCACAGGATGGTTCAGGAACACACAGAACAATCCAAGCAGCAGTGAATGCACTTGCTGCAATGGGAAATAACCGTCCTGCAAGAGCAATCATATATGTAAAATCAGGGGTCTATAATGAGAAGGTGAATATTGGACAGAAACTGCATAATGTGATAGACATGACATTTGAGAACAGTGCAGGTCCAGAAAAGCACCAAGCAGTGGCACTGAAAGTTAGTTCAGACTTATCAGTGTTCTACAGGTGCAGCTTTAAGGGCTACCAAGATACTCTTTACGTGCTCTCAAACCGCCAATTCTACCGTGACTGCCAAATCTACGGCACCATAGATTTCATATTCGGGGATGCTGCAGCGGTGCTACAGAACTGTGACATCTTGGTGAGGAAGCCATTGAGCCATCAATCGAACTTCATAACAGCACAAGGAAGAGATGACCCGAACAAGAACACAGGGATTGCAGTGCAAAGTTGCAGAGTTAGAGCAGCATCAGAGTTTGTGAGCCTAAAGAATTCACAGAAGACATTCCTGGGAAGGCCATGGAGGAAGTACTCAAGGACTGTGTTCATGAAGAGTGAGTTGGATGGAATGATTGAGGCAAAAGGGTGGGGTGAATGGAGTGGAAGTTTTGCACTTTCAACGTTGTTCTATGGAGAGTATATGAACACAGGAGGTGGTGCTTCTACAGAAAATAGGGTGACATGGCCTGGTTTTCATGTGCTGAGAAGTGCTACTGAGGCATCACCTTTCACAGTGAGACAGTTTGTGCAAGGAGAAAGGTGGATTCCTGCTACAGGAGTGCCATACTCTTCTGGAATATGA 1101 0.446 MMSQNSTYTREDALTWISAVMTNHRTCLDGLQEKGYVEARILDRNLTVSLKQALILYSRNKVIAKGPPLQGTISKGSGILESWSEASYKPDFTVAQDGSGTHRTIQAAVNALAAMGNNRPARAIIYVKSGVYNEKVNIGQKLHNVIDMTFENSAGPEKHQAVALKVSSDLSVFYRCSFKGYQDTLYVLSNRQFYRDCQIYGTIDFIFGDAAAVLQNCDILVRKPLSHQSNFITAQGRDDPNKNTGIAVQSCRVRAASEFVSLKNSQKTFLGRPWRKYSRTVFMKSELDGMIEAKGWGEWSGSFALSTLFYGEYMNTGGGASTENRVTWPGFHVLRSATEASPFTVRQFVQGERWIPATGVPYSSGI 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00646 366 Gene3D Invertase/pectin methylesterase inhibitor family protein 2 57 IPR035513 -
Vimu9g00646 366 SUPERFAMILY Pectin lyase-like 89 365 IPR011050 -
Vimu9g00646 366 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 9 49 IPR035513 -
Vimu9g00646 366 ProSitePatterns Pectinesterase signature 2. 199 208 IPR033131 -
Vimu9g00646 366 Gene3D - 145 366 IPR012334 -
Vimu9g00646 366 FunFam Pectinesterase 4 145 366 - -
Vimu9g00646 366 Pfam Pectinesterase 147 352 IPR000070 GO:0030599|GO:0042545
Vimu9g00646 366 Pfam Pectinesterase 91 146 IPR000070 GO:0030599|GO:0042545
Vimu9g00646 366 Gene3D - 58 144 IPR012334 -
Vimu9g00646 366 PANTHER PECTINESTERASE 9 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00646 Vimu-Chr9 8000108 8003230 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00646 1 366 Carbohydrate Esterase AT3G60730 49.770 1.13e-155 446
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00646 K01051 - gmx:100792852 604.364