Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00644 ATGAGTCAATCAAGTGTGCAAGGAAGTTTGAAACCCAATAATGAGAGTTCACAATTAAGAGAGGAAATAGAACAAAAGTTTCAAGAAAGGGATAGAGAGATTAGTGAGCTAAAAAAAAGGATTGGTCAACTTTTGGTAAATCAAAACAAGGGCAAAGGAAAAATAGGAGCTTCATCTAGGAGGAAAGACTATTATGGTGATACTTTCTCTTCCCCTAGTGAACATGATCAATATAGTAGTCATCACAATGATGACCACTATCAAATACCTCCTAGGAGACATCATAGAGATAAAGAGCATCATCCAAGAGAACCCAAGATTGATCTTCCTTCCTTTCATGGAAAGGATGATGTGGAAGAATATCTAGAATGGGAGATGAAAGTTGAGAAATTGTTTGATTGCCACCAAATAGATGATGAGAAGAGAGTAACTATGGCTTCACTAAGCTTTCAAGTTTATGCTCTATATTGGTGGACAGCCTTGCTCAAAGACCTTAGGCTAAGACATTTACCTCACATTAGGTATTGGAATGAGTTAAGGTTTGCCTTAAGAAGAAGACATGTTCCAGCCTACTATGATAAGGAGTTAATGGAAAAGCTCCATAAACTCCAACAAAGAAACATGAGTGTTGAAGAATATAGGCAAAAAATGGAGTTACTCATGTTGAGAGCTGGGATAAGAGAGGAACCAAGAATCACAATTGGTAGGTTCCAAAGTGGACTTAACTATGACATAAGAGATAAGGTAGAACTTTTACCTTACAATGATCTCAATGAATTAGTCCAACTTTGTGTGAGAGTGGAGCAACAACTCAAGAGAAAAAGCTCCGCTAGGAAAGATTACCCTACTAATTCTAGCCATAAGAAAGAATACAAGAGGAAGGGTAGTCTATCTAAATGTGGGGAAAAAGGGCACTATGCAACCGAGTGTCGCAATAGAAGGTCAACTTACATTCTTGAGCATGAGAGTGAAAGTGAGGGTTCTTCATATAGTGAGTCTGAAACATCCACTTCGGAAGAAGAAATTTTGCCTTGTGATGGTGATTTACTCATGGTGAGAAGACTCTTAGAAGGAAAACATGTTGAACTAGAACAATCACAAAGAAAGAACCTATTCCACACAAGATGTAAAGTCTTTGAAAAGACATGTTCAATGATTGTGGATAGTGGCTCTTGTTGCAATTGTTGTAGTTCAAGAATGCTTCAATGGATCAAAGAGGATGAAGCAATAATAGTTAAAGAACAAGTGAGTGTACCCATCTCCATTGGAAAATATGAAGATCAAATTGTTTGTGATATAGTACCAATGGAAGTTGGGCACATATTACTTGGAAGGCCTTGGCAATTTGACAAGCAAGCTTTACATGATGGAGTCACCAACAAAATCACCATTCAACACAAGGGAAAGAAAATTGTTTTGTATCCTCTTACACCTTCTCAAGTGAGAGAGGATCAAATAATTCTTAAGAAGAAGTTGGATGGAGAAAAGAAAAAGGAAGAAAGGAAAGAGAAGAAGGAGAAGAAATTGAGCTTGGTAAATAATGCCTCAACCAAAGAAGTTGTCCAACTTCAAACTTCAAAAGTTTCTAAAAATCTTTTGCTTGGACAACCTCATTTTCTCCTCTATTGCAAGGAGACATTAGTTTCAATAAATCAAGAACTTGGTTTTCTACCAAAGGGGTTGCAAAAACTTTTACAAGAATTTGATGATATATTTCCTAAAGAGGTACCAAGTGAATTACAACCTTTGAGGGGAATAGAACATCAAATAGATTTGGTGCCTGGGGCAAGCCTTCCTAATAGGCCAGCCTATAGGACCAACCCCATGGAAACAAAAGAAATAGAGAAACAAGTTAATGAATTGTTGAATAAAGGATGGATTCAAAAGAGTCTAAGTCCTTGTGTTGTGCCTGTGTTGTTGGTTCCTAAGAAAGATGGATCTTGGAGGATGTGTACAGATTGTAGAGCCATCAACAACATAACTGTCAAATATAGACATCCCATTCCTAGATTGGATGATATAATTCAAGAAGGAGATGAATGGAAAACTGCTTTTAACACCAAGTTTGGTTTGTATGAATGGTTAGTCGTGCCCTTTGGCTTGACCAATGCTCCAAGTACATTCATGAGGTTAATGAACCGTGTCCTTAGGGAATGTATAGGGAGGTTTGTGGTGGTCTACTTTGATGATATTTTAATCTATAGTCAAGGTCTTCAAGAGCACTTAAGACATGTCAAACAAGTTTTGCTTCTTCTTAGAGAACATCATCTTTTTGCCAACTTTGATAAATGTACTTTTTGTCAAGAAAGTGTGATTTTCCTTGGATTCAAAGTTGGAAAAGAAGGTGTACATGTTGATCCTGAGAAGATCAAAGCAATACAAGAATGGCTAACCCAAAAAACAATAGGAGAAGTAAGAAGCTTCCATGGGCTAGCTAGTTTTTATAGAAGATTTGTGAAAGATTTTTCCTCCATAGCTGCCCTTTTGAATGAATTGGTCAAAAAGGATGTTCCTTTTATTTGGGGTGACAAACAAGCCATATCTTTTGAGACCTTGAAAAATAAGTTAACTCATGCACCCATTCTAGCCTTGCTTGACTTTTCCAAAGCTTTTGAACTAGAATGTGATGCATTTGGGATAGGAATAGGAGCTGTCTTGATTCAAGAAGGTCACCCAGTAGCATACTTTAGTGAAAAACTTAGGGGACCTACCTCAAACTATCCTACCTATGATAAGGAATTATATGCCCTCATTAGAGCTTTAAAGACTTGGGAGCATTACTTGGTAACTCGAGAATTTATTATACATACTGACCATGAATCTCTCAAGTATCTTAAAGGGCAAGGAAAGCTAAACAAAAGACATGCCAAGTGGGTGGAATACCTGGAGCAATTTCCATATGTCATCAAACACAAGAAGGGGAGTACTAATGTTGTTGCGGATGCTTTATCTAGAAGACATGCATTAATAGTAACACTAGGCTCTCAAATATTAGGATTTGATGATATAAGAGAGTTATATGAAAATGATGAAACATTTGCATCCATTTATTCATCATGTCTTAAGAAGCCTTTTTATGGATTCTATCTTTCTGAGGGAAAACTTCTTATTAAAGAGACTCATGAAGGAGGACCCATGGGCCATCATGGAGTTGACAAGACTCTAAACATTTTGAAAAGTAAATTCTATTGGCCACACATGAGAGTAGATGTTCAAAGGCATTGTTCTAAATGCATAGCTTGTTTACAAGCTATGTCAAAAAGTATGTCTCGTGGACTCTATACACCTCTTCCAATAGCTAGTACCCCTTGGGAGGACATAAGCATGGATTTTGTTCTAGGATTGCCAAGAACTCAAAAGGGGTATGATTTTATATTTGTGGTGGTAGATCGGTTTAGTAAAATGGCACATTTTATACCTTGCCAAAAAGTAGATGATGCTAGCTATATCTCTAGACTCTTCTTCAAAGAAATAATGAGATTGCATGGCTTACCCAAAACTATAGTGTCTAATAGAGATGTGAAGTTCCTAAGACACTTTTGGAAAACTTTATGGGAAAAGCTTGTAACTAAACTCCTATTTTCTACTACATATCACCCACAAACTGATGGGCAAAGTGAAGTAGTAAATAGGTCTCGATCTACTTTATTAAGGGTAACATTAAGAGGTAATACCAAATCTTGGGATGATCATCTACCTAACATTGAGTTTGCTTACAATAGAGTAGTCCACAAAACTACTAATCTTTCTCCTTTTGAGGTTGTTTATGGTTTTAACCCTATCACACCTCTTGATTTACTACCTCTTCTGGAACCATCTTCTTTTCTTCATAAAGATGGTGTTTCCAAAGCAGAGTTTATCAAGAAATTACATGAGAAGGTTAAAACTCAAATTGAAAAACAAACTCAAAAATATGCTGAACACAATAACAAAGGGAGAAAGAAAATAACTTTTGAAGAAGGAGATCTAGTTTGGCTTCATTTGAGAAAGGAAAGATTTCCTTCTCAACGGAAGTCCAAACTAAGTCCAAGAGCAGATGATCCATTCAAGGTGGTTAAAAGAATAAATGATAATGCATACATATTAGACCTTCCTGAAAGTTATGGTGTCAGTGAACCAGATATGAGGACAGATCCTTTTCAAGAGGGAGGGTCTGATGGAAGACCATCAAGGGCTCATATTGGACCTCTTACTAGAGTTATGGCAAAGCGGATTCAAGAGGAAGAAGGATCACCTATCATTTTGCTCCTATGGAAGCTAGGAGAAGTTGATCCAAGTAGTAGGAGCAAGGGAGGAAGGCCATCCAAGAAGTGGAAGCCAAATGGTGAAAGTAGCCGAGTGACGCTCAGTGTCACTTTTGTACCGCCCAACGTCGACGCAGCAGCACCTCTCACTGTGGGAATTGCTGGCTCAAATAGGCGCGCCTCTCCTAGGATATTTTTGAATTTTTTGAGTGTTTTGAAGGAAATTGAGCTCCTCCTCTCCTATACAAAAGAGGGCTCCATCCTTGATCAATTGCACACTCCTTCCATAACCAAAACTCCAAAATCTCATTCACATACATCCATTACCGCTGCATTCCTCTGCATCACGGATGACTTGTTGTTTGGAGCTGGATCTCTCGGTTTCCAACCATTGGCAGGCTTCCATCAGAAACCACAAGAGTTTTTAGGTCATGGATTGCTAACTGTATTAAAGAATTGGCTTGAACCACTTCCCGATGGAAGCTTGCCAGATCTAACTATACGCACAAAAATTTTGAAGATTAGGAATGATATAGACCTAGAGCACCATTATAGGATCGAACATCTAAAGAATAGTGGCATTGGAAATGCGGTCATGTTTTTATCACAGTTCAATGAAGAAATTAAAGTAAACAGAAAACAAGCTAGTGAACTAATTTACAAGTGGAGTCCTAGGATTGTTAGTGGGAGACAAGTGTTGCAGTGCATTAAATTCCCCAACCTCGGGAAACGTCCGGCGGCAAAGAGGAATGAAGAACTACGGATAGTGGGAACCAGGTGGCTGAATGCAAATGGCCGACCGTCCAATTCCGATCACCCTTCATCTCCGATCATCAACCTCCTTTCAGATTTAATACTCCTGGTGTCAAGATCTTTCATCTTCACCGATCAGTTTTTCAATCGGAGCACTTTGGACGTTCGGTCAATCTTAAAGTGGAACTTTAGAAGTTTAGCTGGAATAGAGTTTCATACTGTTAATATTATTCATCCTGAGGACGTCCGGTCATGTAAAGCACTCGGTCATAGATCTAGTGCTCGGTTTTATGAAACGTTTAGTCAGAAACTATTCGGTATTAATATGAATGTGGGAATGACTCCGGCGTTGTCCTTGATCCTGATATTCCGTGAGGACGCTTCCTCAAGTAGAGGGAGGAGGTCCGCTGTTATACGAGGAAATAACCGTTGGAGGACTAACCTCGGGTGGCAGCTGGAGAAAACAGGACGACCGAGCTACATGTTCATACAGTCCGGACGGTGTCTTATGATCGGTCTTGAGTCAGAGGATACCTTGGAAGCTACTTTGGAGGAAACTCTGGAGGACGCCGTTCAGGCCGAGGAACCAGTGGAAGCTGTGCCCGAGCGTTATGCAGGACCGTCCGGTCCTTAG 5631 0.3902 MSQSSVQGSLKPNNESSQLREEIEQKFQERDREISELKKRIGQLLVNQNKGKGKIGASSRRKDYYGDTFSSPSEHDQYSSHHNDDHYQIPPRRHHRDKEHHPREPKIDLPSFHGKDDVEEYLEWEMKVEKLFDCHQIDDEKRVTMASLSFQVYALYWWTALLKDLRLRHLPHIRYWNELRFALRRRHVPAYYDKELMEKLHKLQQRNMSVEEYRQKMELLMLRAGIREEPRITIGRFQSGLNYDIRDKVELLPYNDLNELVQLCVRVEQQLKRKSSARKDYPTNSSHKKEYKRKGSLSKCGEKGHYATECRNRRSTYILEHESESEGSSYSESETSTSEEEILPCDGDLLMVRRLLEGKHVELEQSQRKNLFHTRCKVFEKTCSMIVDSGSCCNCCSSRMLQWIKEDEAIIVKEQVSVPISIGKYEDQIVCDIVPMEVGHILLGRPWQFDKQALHDGVTNKITIQHKGKKIVLYPLTPSQVREDQIILKKKLDGEKKKEERKEKKEKKLSLVNNASTKEVVQLQTSKVSKNLLLGQPHFLLYCKETLVSINQELGFLPKGLQKLLQEFDDIFPKEVPSELQPLRGIEHQIDLVPGASLPNRPAYRTNPMETKEIEKQVNELLNKGWIQKSLSPCVVPVLLVPKKDGSWRMCTDCRAINNITVKYRHPIPRLDDIIQEGDEWKTAFNTKFGLYEWLVVPFGLTNAPSTFMRLMNRVLRECIGRFVVVYFDDILIYSQGLQEHLRHVKQVLLLLREHHLFANFDKCTFCQESVIFLGFKVGKEGVHVDPEKIKAIQEWLTQKTIGEVRSFHGLASFYRRFVKDFSSIAALLNELVKKDVPFIWGDKQAISFETLKNKLTHAPILALLDFSKAFELECDAFGIGIGAVLIQEGHPVAYFSEKLRGPTSNYPTYDKELYALIRALKTWEHYLVTREFIIHTDHESLKYLKGQGKLNKRHAKWVEYLEQFPYVIKHKKGSTNVVADALSRRHALIVTLGSQILGFDDIRELYENDETFASIYSSCLKKPFYGFYLSEGKLLIKETHEGGPMGHHGVDKTLNILKSKFYWPHMRVDVQRHCSKCIACLQAMSKSMSRGLYTPLPIASTPWEDISMDFVLGLPRTQKGYDFIFVVVDRFSKMAHFIPCQKVDDASYISRLFFKEIMRLHGLPKTIVSNRDVKFLRHFWKTLWEKLVTKLLFSTTYHPQTDGQSEVVNRSRSTLLRVTLRGNTKSWDDHLPNIEFAYNRVVHKTTNLSPFEVVYGFNPITPLDLLPLLEPSSFLHKDGVSKAEFIKKLHEKVKTQIEKQTQKYAEHNNKGRKKITFEEGDLVWLHLRKERFPSQRKSKLSPRADDPFKVVKRINDNAYILDLPESYGVSEPDMRTDPFQEGGSDGRPSRAHIGPLTRVMAKRIQEEEGSPIILLLWKLGEVDPSSRSKGGRPSKKWKPNGESSRVTLSVTFVPPNVDAAAPLTVGIAGSNRRASPRIFLNFLSVLKEIELLLSYTKEGSILDQLHTPSITKTPKSHSHTSITAAFLCITDDLLFGAGSLGFQPLAGFHQKPQEFLGHGLLTVLKNWLEPLPDGSLPDLTIRTKILKIRNDIDLEHHYRIEHLKNSGIGNAVMFLSQFNEEIKVNRKQASELIYKWSPRIVSGRQVLQCIKFPNLGKRPAAKRNEELRIVGTRWLNANGRPSNSDHPSSPIINLLSDLILLVSRSFIFTDQFFNRSTLDVRSILKWNFRSLAGIEFHTVNIIHPEDVRSCKALGHRSSARFYETFSQKLFGINMNVGMTPALSLILIFREDASSSRGRRSAVIRGNNRWRTNLGWQLEKTGRPSYMFIQSGRCLMIGLESEDTLEATLEETLEDAVQAEEPVEAVPERYAGPSGP 1876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00644 1876 SUPERFAMILY DNA/RNA polymerases 564 971 IPR043502 -
Vimu9g00644 1876 Pfam TFIIS helical bundle-like domain 1601 1638 IPR017923 -
Vimu9g00644 1876 Coils Coil 495 515 - -
Vimu9g00644 1876 Gene3D - 876 992 IPR036397 GO:0003676
Vimu9g00644 1876 Gene3D - 787 872 IPR043128 -
Vimu9g00644 1876 FunFam Retrovirus-related Pol polyprotein from transposon 17.6-like protein 587 703 - -
Vimu9g00644 1876 SUPERFAMILY Ribonuclease H-like 1096 1258 IPR012337 -
Vimu9g00644 1876 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 1550 1645 IPR035441 -
Vimu9g00644 1876 CDD RT_LTR 625 778 - -
Vimu9g00644 1876 Gene3D - 1020 1084 - -
Vimu9g00644 1876 MobiDBLite consensus disorder prediction 77 92 - -
Vimu9g00644 1876 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 687 778 IPR000477 -
Vimu9g00644 1876 CDD RNase_HI_RT_Ty3 872 987 - -
Vimu9g00644 1876 MobiDBLite consensus disorder prediction 1857 1876 - -
Vimu9g00644 1876 MobiDBLite consensus disorder prediction 1424 1443 - -
Vimu9g00644 1876 MobiDBLite consensus disorder prediction 17 39 - -
Vimu9g00644 1876 FunFam Transposon Tf2-6 polyprotein-like Protein 788 877 - -
Vimu9g00644 1876 Gene3D - 1096 1307 IPR036397 GO:0003676
Vimu9g00644 1876 ProSiteProfiles Integrase catalytic domain profile. 1099 1259 IPR001584 GO:0015074
Vimu9g00644 1876 MobiDBLite consensus disorder prediction 321 341 - -
Vimu9g00644 1876 MobiDBLite consensus disorder prediction 275 302 - -
Vimu9g00644 1876 FunFam Transposon Ty3-G Gag-Pol polyprotein 666 778 - -
Vimu9g00644 1876 Pfam RNase H-like domain found in reverse transcriptase 866 965 IPR041373 -
Vimu9g00644 1876 MobiDBLite consensus disorder prediction 1 110 - -
Vimu9g00644 1876 Coils Coil 20 40 - -
Vimu9g00644 1876 ProSiteProfiles TFIIS N-terminal domain profile. 1563 1644 IPR017923 -
Vimu9g00644 1876 Gene3D HIV Type 1 Reverse Transcriptase, subunit A, domain 1 676 703 - -
Vimu9g00644 1876 Gene3D HIV Type 1 Reverse Transcriptase, subunit A, domain 1 586 665 - -
Vimu9g00644 1876 MobiDBLite consensus disorder prediction 1 16 - -
Vimu9g00644 1876 Pfam Integrase zinc binding domain 1034 1084 IPR041588 -
Vimu9g00644 1876 PANTHER TRANSPOSON TY3-I GAG-POL POLYPROTEIN 560 1263 - -
Vimu9g00644 1876 Gene3D Acid Proteases 359 472 IPR021109 -
Vimu9g00644 1876 Pfam Retrotransposon gag protein 145 242 IPR005162 -
Vimu9g00644 1876 Coils Coil 1291 1311 - -
Vimu9g00644 1876 Gene3D - 666 675 IPR043128 -
Vimu9g00644 1876 Gene3D - 704 778 IPR043128 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00644 Vimu-Chr9 7930746 7938653 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Vimu9g00644 RT_RNaseH 1.3e-30 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00644 - - minc:123204804 1350.5