Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00643 ATGGAGATGACCAATATGATTAGTAAGAGCAATTACGAGGGAGTACAAGATAAAAAGGATAAAGAAATCAAGGATCCTTTTCAAATAGGAAGAAAGAGGAAAAGAAACGAGAGAAACCCCACTGAAATAACGTTGTCAGTCGTAAATGTCATGATTGAGTTTGAAGTTGCTGCTCAAGAGGATGCTGATCGTAAAAAACATGGAAAACCAGCCATTAATAAGCTTAAGAAGTTGTCTCTTTTTACCGATGTCCTTTCAGAGAAACCACAAGAGTTTTTAGATCACGGATTGCTAACTGTATTAAAGAATTGGCTTGAACCACTTGCCGATGGAAGCTTGCCAGATCTAACTATACGCACAAAAATTTTGAACATTCTGAATGATATAGACCTAGAGCACCATGATAGGATCGAACATCTAAAGAATAGTGGCATTGGAAATGCGGTCATGTTTTTATCACAGTCCGATGAAGAAATTAATGTAAACAGAAAACTAGCCAGTGAACTAATTTACAAGTGG 519 0.368 MEMTNMISKSNYEGVQDKKDKEIKDPFQIGRKRKRNERNPTEITLSVVNVMIEFEVAAQEDADRKKHGKPAINKLKKLSLFTDVLSEKPQEFLDHGLLTVLKNWLEPLADGSLPDLTIRTKILNILNDIDLEHHDRIEHLKNSGIGNAVMFLSQSDEEINVNRKLASELIYKW 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00643 173 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 39 173 IPR035441 -
Vimu9g00643 173 ProSiteProfiles TFIIS N-terminal domain profile. 99 173 IPR017923 -
Vimu9g00643 173 MobiDBLite consensus disorder prediction 13 35 - -
Vimu9g00643 173 PANTHER PROTEIN IWS1 HOMOLOG 1 16 173 IPR044204 GO:0009742|GO:0032784
Vimu9g00643 173 Pfam TFIIS helical bundle-like domain 125 173 IPR017923 -
Vimu9g00643 173 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00643 Vimu-Chr9 7926091 7927135 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Vimu9g00643 Med26 1.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00643 K17498 - qsa:O6P43_025102 209.149