Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00640 ATGATTTCCTTCAATGATGAACTACAGGGAAAAGTTAAAGAATTGAAGGCTGAGAAGAATGAGCTTCGTGATGAGAAGAATATACTGAAGAAAGAGAAAGAAAAGAAAAGCCCAGCTGCTAAAGGACAAGTTGGTACCCATAAGCTGATACCTTTCATTGGCTATCCTGGAATTGCTATGTGGCAGTTTATGCCCCCTGCTGCAGTTGATACATCAAAGGATCATCTGCTTCGACCTCCACATATAGGTGATTTTACTTATCCAAGGCTTGCAGATTTTGGTGCTGCAATATCTGGGGCAAATAAATTACAATGCCAACAAGTTCTTGAAGAGTTAGATGTATATGATAAAAGAAGTGTGTCAAATGATGAAGGCAATGAAGACAATGAAGAACATGATTGTATTAGTGGGAGTTTTGAAAAAACCGTCGGTATTAGCGGGGTTTTTATGGAAACCGCCGGTGAGTACTTAGCGATGCAGCTTTTTCCCAAAGTTTTTGTAATCGTGGGAAGAGTGCTGGAAGCAGAGTTGTGGCAGTGTTTATGCTTGATCAGATCAAATGTCTGTTTCATCTTCTTCTTGCAAATGCTTGGGTTCGGGGTTGCAATAGAGTTGTGGCAGTGTGAGCAGGTCTTTCGCACTGCAAGAACCCCTAAAAACAAGGGCAGAAGATTTTGGGGATGCCCCAAGTTCAAGGGTGGGAGTGAGGATTGTTCTTCTGGATGCAACTTCTTTAAGTGGTGCAATGAAGATGTAATTCATGAAGAAAATGTCGTCACTGTAGAAGAAAGTGGAAGAAATAACGAAGTAGGTGGAAGTTTGATGAAGATGGAACAAATGTTGATGAAGATGGAAGAGAGAGATGGTGAAAAACTGAAAATAGCATGTTTACAAAAAACTGTAGTTAGTCTGGAAAATTGGTTGAAGTTGTTAACGGGGGTGGTGGTTATTATATGTCTTTGTAATGTAATTGTCATATCAATGCTGATGAAACTAGGTTGA 1002 0.3992 MISFNDELQGKVKELKAEKNELRDEKNILKKEKEKKSPAAKGQVGTHKLIPFIGYPGIAMWQFMPPAAVDTSKDHLLRPPHIGDFTYPRLADFGAAISGANKLQCQQVLEELDVYDKRSVSNDEGNEDNEEHDCISGSFEKTVGISGVFMETAGEYLAMQLFPKVFVIVGRVLEAELWQCLCLIRSNVCFIFFLQMLGFGVAIELWQCEQVFRTARTPKNKGRRFWGCPKFKGGSEDCSSGCNFFKWCNEDVIHEENVVTVEESGRNNEVGGSLMKMEQMLMKMEERDGEKLKIACLQKTVVSLENWLKLLTGVVVIICLCNVIVISMLMKLG 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00640 333 ProSiteProfiles Zinc finger GRF-type profile. 189 251 IPR010666 GO:0008270
Vimu9g00640 333 PANTHER BHLH TRANSCRIPTION FACTOR 39 80 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
Vimu9g00640 333 Pfam GRF zinc finger 211 250 IPR010666 GO:0008270
Vimu9g00640 333 Coils Coil 5 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00640 Vimu-Chr9 7875159 7879239 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00640 5 80 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 52.000 7.67e-26 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00640 - - vra:111242288 192.586