Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00616 TTGAGTGCTGCCGTCGAACTGTGTTGCTGTAAAACTTCACTGTGTGCTGCCGCCAGTATTGCTGTCAAGTTCCATCAGTGGAAAAATGTTTGTGCAGAAGAAAATGTGCATTTGGGGGTTGACCCAGCCCTACTGGAATGGCAACCCATTTCGTGGGGGCTAACGGATGTGAAACAAGCTGGTGCATATTCAGGGTTACTGTGTGGAGGGATATCTGGAAGGATACGGCTCCACTCTCTGCCCTTGGCAAGGATAAAGAAGATCATGAAGAAATCAGGGGAGGATGTTAAAATGATATTAGAGGACGCTCCAATTATTTTCTCCAAGGCTTGTGAGCTCTTCATTGAGGACTTTGCACAAAGGACTTAA 369 0.4634 MSAAVELCCCKTSLCAAASIAVKFHQWKNVCAEENVHLGVDPALLEWQPISWGLTDVKQAGAYSGLLCGGISGRIRLHSLPLARIKKIMKKSGEDVKMILEDAPIIFSKACELFIEDFAQRT 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00616 122 Gene3D Histone, subunit A 74 122 IPR009072 GO:0046982
Vimu9g00616 122 SUPERFAMILY Histone-fold 71 119 IPR009072 GO:0046982
Vimu9g00616 122 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 79 121 IPR003958 -
Vimu9g00616 122 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 73 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00616 Vimu-Chr9 7549376 7550300 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00616 75 122 CCAAT-HAP5 Transcription Factor Family AT1G54830 56.250 2.67e-12 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Vimu9g00616 CBFD_NFYB_HMF 1.4e-11 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00616 - - adu:107462326 106.301