Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00615 ATGGCCTTCTGTATGATGGCTGAGCTGGCATCTTTGTTTGGTGCCACCATCTCTCCTTCTTCCATCAATAAGGAACGACAGGCTTTGCTCCATAGCGGTTGGTGGAATGATAACCGTAATATCTCAAACCATTGTGATTGGGACGACATCTCTTGCAATGAAGGAGGAAATGTTATTATTATTGGTGGTTCGTCGATGAGGATTCCTTCGTCAAAAGAATTGCTTTGGATTGAGAAGTTGAACGTCACTGCCTTCCACAGTTTAGAGTATCTGTATCTAGATGGAATGGGTCTTAGAGGAAGCATCCCCACAGAAATAAGCACACTTACAAACCTTACCTATTTGATCTTGTCCAACAATCATCTCCATGGATCAATACCACCGCAGCTAGGTAACTTGACACAATTACAGATGTTATATCTTTCTGAGAATTCTCTTAGAGGTTTAATCTGGAATTCTCTAGCAGGTTTAATCCCATCTACATTGGGTCAATTGATGAACTTACAATATCTCTATCTTGAATCAAACAAACTTGAAGGTAGGATTCCCACAGAATTAGGGAATTTGACAAAATTACGGATATTACTTCTATCGGGTAATTCACTCACAGGTTCAATTCCTCCTGCTTTTGGTCAATTAAAGATCTTGACAGACTTATTCCTTCAATCAAACCAAATTACTGGTCATATACCAGTAGAATTTGGAAATTTAAAAGGTTTACAAAGATTACATCTCTCAAATGATTCCCTCAACGGTTCAATCCCTCCTACTTTAGGTCGGTTGGAGAATTTGGTACACCTCTACCTTGATTCTAATCAAATACAAGGCCACATACCCGACGAATTAGGAAATCTGACCAAATTAGAAGTTTTGCAACTTTCTCATAATAAGATTTCAGATATCATTGAAGCAACTGAAGGCTTTGATCTCAAGTATTGCATTGGGACAGGCGTATATGGTAGTGTATATAGAGCACAACTTCCCAGTGGACATATTGTTGCATTAAAAAAGCTCCACCATATGGAATCACAAAATCCATCATTTGACAAAAGTTTTCGAAATGAGGTGGAAGCTAAAGAGTTGAATTGGAGTAAGAGGGTGAATGTCATTAAAGGCATGGCAGAGGCTCTATCCTACATGCATCATGATTGTAGTCCACCAATTGTTCACCGAGATGTAACAAGTAGCAAAATTTTGTTAAACTCGGAATTGGAGGCTTTTGTCTCAGACTTTGGCACAGCTAGACTCCTTGATCCCGATTCTTCAAATCAAACCTTAGTAGTTGGCACCTATGGCTACATTGCTCCAGAGCTTGCTTATACAATGAGTTTGACAAAAGAATGTGATGTTTATAGTTTTGGAGTGGTGGCTTTAGAAGCATTAATGGGAAAACATCCTGGAGAGTTAATCTCATCTTTAACAAACCTAACTATTCAAAATATGTTAGTGAAAGATCTCTTGGATTCACGTCTACCTCTTCCTCGTCGGAAAGATACCTCTTCCTCGTCGGAAAGATACCTCTTCCTCGTCGGAAAGATGCGCAAGATATAA 1551 0.3907 MAFCMMAELASLFGATISPSSINKERQALLHSGWWNDNRNISNHCDWDDISCNEGGNVIIIGGSSMRIPSSKELLWIEKLNVTAFHSLEYLYLDGMGLRGSIPTEISTLTNLTYLILSNNHLHGSIPPQLGNLTQLQMLYLSENSLRGLIWNSLAGLIPSTLGQLMNLQYLYLESNKLEGRIPTELGNLTKLRILLLSGNSLTGSIPPAFGQLKILTDLFLQSNQITGHIPVEFGNLKGLQRLHLSNDSLNGSIPPTLGRLENLVHLYLDSNQIQGHIPDELGNLTKLEVLQLSHNKISDIIEATEGFDLKYCIGTGVYGSVYRAQLPSGHIVALKKLHHMESQNPSFDKSFRNEVEAKELNWSKRVNVIKGMAEALSYMHHDCSPPIVHRDVTSSKILLNSELEAFVSDFGTARLLDPDSSNQTLVVGTYGYIAPELAYTMSLTKECDVYSFGVVALEALMGKHPGELISSLTNLTIQNMLVKDLLDSRLPLPRRKDTSSSSERYLFLVGKMRKI 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00615 516 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 150 229 - -
Vimu9g00615 516 Gene3D Ribonuclease Inhibitor 20 153 IPR032675 -
Vimu9g00615 516 ProSiteProfiles Protein kinase domain profile. 192 516 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu9g00615 516 Pfam Protein kinase domain 367 499 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu9g00615 516 Gene3D Transferase(Phosphotransferase) domain 1 344 513 - -
Vimu9g00615 516 ProSitePatterns Protein kinases ATP-binding region signature. 314 336 IPR017441 GO:0005524
Vimu9g00615 516 PANTHER LEUCINE RICH REPEAT KINASE 2 299 358 - -
Vimu9g00615 516 Gene3D Ribonuclease Inhibitor 154 317 IPR032675 -
Vimu9g00615 516 SMART LRR_sd22_2 165 191 - -
Vimu9g00615 516 SMART LRR_sd22_2 261 284 - -
Vimu9g00615 516 SMART LRR_sd22_2 213 234 - -
Vimu9g00615 516 SMART LRR_sd22_2 285 306 - -
Vimu9g00615 516 SMART LRR_sd22_2 109 135 - -
Vimu9g00615 516 Pfam Leucine Rich repeats (2 copies) 110 149 IPR025875 -
Vimu9g00615 516 SUPERFAMILY L domain-like 34 304 - -
Vimu9g00615 516 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 80 149 - -
Vimu9g00615 516 SUPERFAMILY Protein kinase-like (PK-like) 293 473 IPR011009 -
Vimu9g00615 516 FunFam Leucine-rich repeat receptor protein kinase EMS1 230 306 - -
Vimu9g00615 516 ProSiteProfiles Leucine-rich repeat profile. 287 306 IPR001611 GO:0005515
Vimu9g00615 516 Pfam Leucine rich repeat 191 250 IPR001611 GO:0005515
Vimu9g00615 516 Pfam Leucine rich repeat 259 298 IPR001611 GO:0005515
Vimu9g00615 516 SMART LRR_typ_2 285 307 IPR003591 -
Vimu9g00615 516 SMART LRR_typ_2 133 156 IPR003591 -
Vimu9g00615 516 SMART LRR_typ_2 261 284 IPR003591 -
Vimu9g00615 516 SMART LRR_typ_2 165 188 IPR003591 -
Vimu9g00615 516 SMART LRR_typ_2 213 236 IPR003591 -
Vimu9g00615 516 SMART LRR_typ_2 109 132 IPR003591 -
Vimu9g00615 516 SMART LRR_typ_2 189 212 IPR003591 -
Vimu9g00615 516 Pfam Leucine Rich Repeat 167 189 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00615 Vimu-Chr9 7493856 7496983 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00615 82 436 Receptor kinase-like Gene Family AT4G08850 35.845 7.11e-62 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vimu9g00615 Pkinase 3.5e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00615 - - vun:114166569 419.468