Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00610 ATGAAACAAGCTGGTGCATATTCAGGGTTACTGTGTGGAGGGATATCTGGAAGGACAAGGCTCCACTCTCTGCCCTTGACAAGGATAAAGAAGATCATGAAGAAATCAGGGAAGGATGTTAAAATGATATCAGAAGACGCTCCAATTACTTTCTCCAAGGCTTGTGAGCTCTTCGACTTAACCTCGACAGTTATAGCCACTGATTTATTTGACTTTTTTATTACTTTGGTTTCCAACTCTGACAGCCATGCACTTGGTGCCACCACCGTTGTCAAGGAGCTTGATCATCTCCACGATATGAAGTCAGATAATAGGCTGCATAATATTCATACAGTGGAGGTTTCAAGGAGGAAGAAATCAAAGTATATGGGAAATAATAACAAACCAAGAAATTTTCCAAATAACTCTTGTGGGAACAACATGGAGAAATAA 432 0.4005 MKQAGAYSGLLCGGISGRTRLHSLPLTRIKKIMKKSGKDVKMISEDAPITFSKACELFDLTSTVIATDLFDFFITLVSNSDSHALGATTVVKELDHLHDMKSDNRLHNIHTVEVSRRKKSKYMGNNNKPRNFPNNSCGNNMEK 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00610 143 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 23 58 IPR003958 -
Vimu9g00610 143 SUPERFAMILY Histone-fold 17 58 IPR009072 GO:0046982
Vimu9g00610 143 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 22 58 - -
Vimu9g00610 143 Gene3D Histone, subunit A 15 68 IPR009072 GO:0046982
Vimu9g00610 143 MobiDBLite consensus disorder prediction 125 143 - -
Vimu9g00610 143 MobiDBLite consensus disorder prediction 117 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00610 Vimu-Chr9 7448382 7449077 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00610 22 81 CCAAT-HAP5 Transcription Factor Family AT1G54830 39.759 1.35e-14 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00610 - - ccaj:109817175 133.265