Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00596 ATGGAAAACTCATATAGCAGTTTACCATTACTGGATCTTGTATCTGTTATCTTCTTTTATGCATTGTTCCTACAAGGTGTCATTGCTGACATTATAGCAGCTTCCAATTCCTCATCCCCTAATGAGGAACAAAAAGCTTTTTATCAGAGTGGATGGGGAGCTCAAAATATCTCAGAATACTGTAAATGGAATGGTATTGTGTGCAATGAAGCTCAAAGTGTTATAGAGATTTCAACTAAGAACAATTTTTATATTCCTTCAACACAAGCTCATATTCAGCATTTCAATGTGGCTGCATTCCCTGATTTAATCAGTCTAGAGCTTAGTGGATCAGGACTCAAAGGAAATATTCCTTCAGAAATTAGCTCTCTTAAAAAGCTTGTCCATCTTGATCTGTCTTCTAATTGTCTTCAAGGTGAGTTGCCTAGTTCTCTTTCAAGTCTCAATCAACTTCAGACACTAAATATTTCTAACAATTTTCTTACTGGTGAGATCCCTTCTACTTTACAGCACTTGATCCATCTCAAAGTTTTGGATCTTTCTCATAATAAGATTTCTGGTGTTATACCAAAGGGGATATCTGCACTGACAGAACTAACTAGTGTTCAACTATCTTGGAATCAAATAACTGGTTCCATTCCAGCTGGGATTGGGCAAATCCTAAGACTTCAAAGTTTAGATATTTCCAACAATCATCTCAAGGGACCTATCCCAGATGATGTTTTGAACCATTGTCAGTATGTGCAGTTAAGGAATAACTCTTTAAATGGGAGCATTCCTTCTCAAGTAGGAAATATTTCATATCTAGATCTTAGTTATAATGACCTCACAGGCAACATACCTGAGACCCTTCATTCTGTTTCTCACCTTAATTTGTCATACAATTCCTTTAATGCTTCAGATCACAGTTTTTGTGGTTTTCCAAAAGACTCTTTAATTTGTAACAAGGATATGAAAGATTCTTGCTCTTTTGATGTTGATGTTTCTGATGCTGATATTTCTCTTGTAATGATACTTGTCTTCTCTATCTTCAATGGCATGATTTTCTCAATGGTCCTTGTCTGTTGGGGAATTCATGTTTTCTGTCCCCTCCATAATGAGTTTGGAAATGGGCAAAGAAGAAAGAATGGAGACATGCTTTCAATTTGGAACTATGATGGTAAGATTGCATTTGAAGACATAATTAAGGCCACAGAAGACTTTGATATAAAGTATTGCATAGGAACGGGTGCTTATGGGAGTGTGTACAAAGCACAACTTCCCAGTGGCAGAATTGTTGCACTGAAAAAACTTCACAAAGCAGAATCTGAAAATCCATCCTCTTACAAGAGCTTTTGCAATGAGACCAAGATCTTGACAGAAATTCGCCATCGTAACATCATCAAGCTTTATGGATTTTGTTTGCATAACAAGTGTATGTTTTTAGTGTATGAGTATATGGAAAGAGGAAGCTTATTTTGCAATTTGTCTTATGATGTTGAAGCTCAAGAGCTGAATTGGAGCAAGAGGATAAATGTTGTTAAAGGAATAGCTTATGGCTTGGCTCACATGCACCATGGTTGTACCCCACCCATTGTTCATAGAGACATAAGCAGTAACAACATTTTGTTAAACTCAGAGTTGCAGGCTTTCATCTCAGACTTTGGCACTGCAAGACTTCTTGATTTGCATTCATCAAATCAGACTCTTCCTGCTGGTACTTATGGATATGTTGCTCCAGAATTGGCTTACACCTTGAGTGTGACCACCAAATGTGATGTTTATAGCTTTGGAGTTGTGGTTTTGGAAGCAATGATGGGTAGACATCCAGCTGAATTGATTTCTTGTTTATCAGAACCATCCATTCAGAAGAAGAAGCTGAAAGATATATTGGACACACGTATTCCACTACCATATTTTAGAAAAGATATGCAAGATATTGTGCTTGTTGTAACATTGGCATTAGCATGTTTGAGTCCCCACCCAAAATCCAGACCATCAATGCAGGAAATAGCTAATGAGCTTTTAGCTTCCAAGCCACCATTGCTTTGGCATTTTGATAGCATTTCCATCCACCAACTCATGAAGCAAAAAGTATATATAATTGGTAGAAGTTAG 2097 0.371 MENSYSSLPLLDLVSVIFFYALFLQGVIADIIAASNSSSPNEEQKAFYQSGWGAQNISEYCKWNGIVCNEAQSVIEISTKNNFYIPSTQAHIQHFNVAAFPDLISLELSGSGLKGNIPSEISSLKKLVHLDLSSNCLQGELPSSLSSLNQLQTLNISNNFLTGEIPSTLQHLIHLKVLDLSHNKISGVIPKGISALTELTSVQLSWNQITGSIPAGIGQILRLQSLDISNNHLKGPIPDDVLNHCQYVQLRNNSLNGSIPSQVGNISYLDLSYNDLTGNIPETLHSVSHLNLSYNSFNASDHSFCGFPKDSLICNKDMKDSCSFDVDVSDADISLVMILVFSIFNGMIFSMVLVCWGIHVFCPLHNEFGNGQRRKNGDMLSIWNYDGKIAFEDIIKATEDFDIKYCIGTGAYGSVYKAQLPSGRIVALKKLHKAESENPSSYKSFCNETKILTEIRHRNIIKLYGFCLHNKCMFLVYEYMERGSLFCNLSYDVEAQELNWSKRINVVKGIAYGLAHMHHGCTPPIVHRDISSNNILLNSELQAFISDFGTARLLDLHSSNQTLPAGTYGYVAPELAYTLSVTTKCDVYSFGVVVLEAMMGRHPAELISCLSEPSIQKKKLKDILDTRIPLPYFRKDMQDIVLVVTLALACLSPHPKSRPSMQEIANELLASKPPLLWHFDSISIHQLMKQKVYIIGRS 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00596 698 Gene3D Ribonuclease Inhibitor 191 319 IPR032675 -
Vimu9g00596 698 Pfam Leucine rich repeat 150 209 IPR001611 GO:0005515
Vimu9g00596 698 Gene3D Ribonuclease Inhibitor 34 190 IPR032675 -
Vimu9g00596 698 Gene3D Phosphorylase Kinase; domain 1 369 479 - -
Vimu9g00596 698 ProSiteProfiles Protein kinase domain profile. 401 676 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu9g00596 698 ProSitePatterns Tyrosine protein kinases specific active-site signature. 525 537 IPR008266 GO:0004672|GO:0006468
Vimu9g00596 698 PANTHER LEUCINE RICH REPEAT KINASE 2 175 672 - -
Vimu9g00596 698 PRINTS Leucine-rich repeat signature 220 233 - -
Vimu9g00596 698 PRINTS Leucine-rich repeat signature 175 188 - -
Vimu9g00596 698 Pfam Leucine Rich Repeat 126 148 IPR001611 GO:0005515
Vimu9g00596 698 Gene3D Transferase(Phosphotransferase) domain 1 480 674 - -
Vimu9g00596 698 FunFam Nuclear pore complex protein NUP107 34 174 - -
Vimu9g00596 698 SUPERFAMILY Protein kinase-like (PK-like) 383 668 IPR011009 -
Vimu9g00596 698 ProSiteProfiles Leucine-rich repeat profile. 174 197 IPR001611 GO:0005515
Vimu9g00596 698 FunFam LRR receptor-like serine/threonine-protein kinase 175 245 - -
Vimu9g00596 698 ProSitePatterns Protein kinases ATP-binding region signature. 407 429 IPR017441 GO:0005524
Vimu9g00596 698 FunFam Leucine-rich repeat receptor protein kinase MSP1 365 479 - -
Vimu9g00596 698 SMART LRR_typ_2 284 306 IPR003591 -
Vimu9g00596 698 SMART LRR_typ_2 196 220 IPR003591 -
Vimu9g00596 698 SMART LRR_typ_2 124 148 IPR003591 -
Vimu9g00596 698 SMART LRR_typ_2 172 195 IPR003591 -
Vimu9g00596 698 FunFam MDIS1-interacting receptor like kinase 2 480 674 - -
Vimu9g00596 698 SUPERFAMILY L domain-like 60 310 - -
Vimu9g00596 698 Pfam Protein kinase domain 405 666 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00596 Vimu-Chr9 7239582 7242611 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00596 103 573 Receptor kinase-like Gene Family AT4G08850 42.276 5.72e-109 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vimu9g00596 Pkinase 1.9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00596 - - vra:106773464 1329.69