Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vimu9g00570 | ATGGAAGATTCTGACCAACCTGCCAAATCAACTGAAAACCAGCAAACTGAGCAAGTTTGTAGTTTTTTCAGAAAACCGATAAATAAAAGGAATATAAGGAAGCGGACTTTTGATGATGAAGACAATGAGGAGGACTCAAACAAAGAAACTTCTCTGTTGCATGTTCAAAAGAAAACCTTAAAGCCTGACAATAAGTTGTTCTTTTCCACTGGCTCGTCAAAAAGTTCTGTATCTGCTGAACCAAGTGAAGAGTCAGGAAAACCAGTATTTCAATTTGAGTCTTCAAAAGAGATTCAAGTTCAACATGATAGCAAAGCAACAGCAATTCTAGAGACTGAGACTGAGTTTTCGAAAGATGCTCGTGCCATCCGTGAAAGAGCTCTCAAGCAAGCATCAGAGAGTCTGAAAGGGAAAAGTGCAAGGCCTGAGGATGAAAAATTATATAAGGGGATGAACAGTTACAAGGACTACAAGGCTGGCTTTCGTAGAGAACAAACAATTGCTAGTGAAAAAGCTGGTGGAGCACATGGTCCTCTGAGGGCTTCAGCGCATATAAGAGTTTCAGCGAGGTTTGATTATCAGCCTGACATATGTAAGGACTATAAAGAAACTGGTTACTGTGGATATGGCGATTCATGTAAGTTTATGCATGATCGAGGGGATTACAAGTCTGGGTGGCAGTTGGAGAAGGAATGGGACGAAGCTGAGAAAGCAAGGAAGATGAGATTGGCTGCAGGTGAAGACGCAGACGAGGAGGAGGGTGCTAACTTGAATGATGAAGATGACGAGGATTCGTTACCTTTTGCATGTTTCATCTGTAGAAACCCCTTTGCGGATCCTGTTGTAACCAAATGCAAGCACTACTTCTGTGAGCATTGTGCATTGAAGCACCATGCAAAGAATAAGAAGTGTTTTGTCTGCAACCAGCCAACACTTGGCATTTTTAATGTTGCTCACGAGATACGCAGGAAGATGCCCGATGATAAATAA | 990 | 0.4192 | MEDSDQPAKSTENQQTEQVCSFFRKPINKRNIRKRTFDDEDNEEDSNKETSLLHVQKKTLKPDNKLFFSTGSSKSSVSAEPSEESGKPVFQFESSKEIQVQHDSKATAILETETEFSKDARAIRERALKQASESLKGKSARPEDEKLYKGMNSYKDYKAGFRREQTIASEKAGGAHGPLRASAHIRVSARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQLEKEWDEAEKARKMRLAAGEDADEEEGANLNDEDDEDSLPFACFICRNPFADPVVTKCKHYFCEHCALKHHAKNKKCFVCNQPTLGIFNVAHEIRRKMPDDK | 329 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vimu9g00570 | 329 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 193 | 218 | IPR000571 | GO:0046872 | |
| Vimu9g00570 | 329 | MobiDBLite | consensus disorder prediction | 63 | 98 | - | - | |
| Vimu9g00570 | 329 | SUPERFAMILY | CCCH zinc finger | 191 | 223 | IPR036855 | GO:0046872 | |
| Vimu9g00570 | 329 | MobiDBLite | consensus disorder prediction | 1 | 98 | - | - | |
| Vimu9g00570 | 329 | SMART | c3hfinal6 | 192 | 219 | IPR000571 | GO:0046872 | |
| Vimu9g00570 | 329 | FunFam | Zinc finger CCCH domain-containing protein 1 | 190 | 224 | - | - | |
| Vimu9g00570 | 329 | MobiDBLite | consensus disorder prediction | 32 | 61 | - | - | |
| Vimu9g00570 | 329 | Gene3D | - | 190 | 224 | - | - | |
| Vimu9g00570 | 329 | Pfam | Zinc finger, C3HC4 type (RING finger) | 269 | 311 | - | - | |
| Vimu9g00570 | 329 | SMART | ring_2 | 270 | 307 | IPR001841 | - | |
| Vimu9g00570 | 329 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 268 | 327 | IPR013083 | - | |
| Vimu9g00570 | 329 | ProSiteProfiles | Zinc finger C3H1-type profile. | 192 | 220 | IPR000571 | GO:0046872 | |
| Vimu9g00570 | 329 | ProSitePatterns | Zinc finger RING-type signature. | 285 | 294 | IPR017907 | - | |
| Vimu9g00570 | 329 | MobiDBLite | consensus disorder prediction | 8 | 22 | - | - | |
| Vimu9g00570 | 329 | ProSiteProfiles | Zinc finger RING-type profile. | 270 | 308 | IPR001841 | - | |
| Vimu9g00570 | 329 | SUPERFAMILY | RING/U-box | 269 | 312 | - | - | |
| Vimu9g00570 | 329 | CDD | RING-HC_RNF113A_B | 263 | 316 | - | - | |
| Vimu9g00570 | 329 | FunFam | RING finger protein 113A | 268 | 327 | - | - | |
| Vimu9g00570 | 329 | PANTHER | ZINC FINGER PROTEIN 183 | 1 | 328 | IPR039971 | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vimu9g00570 | 7 | 329 | C2H2 Transcription Factor Family | AT1G01350 | 66.563 | 7.90e-161 | 451 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C3H | Vimu9g00570 | zf-C3HC4_3 | 5.9e-09 | CL0229 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vimu9g00570 | K13127 | - | gmx:100817146 | 591.652 |