Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00558 TTGGATGAAGAAAGACAGGCCTTACTCAAGAGTGGTTGGTGGAATGATTACAGAAATGTTTCAAGCCATTGTGATTGGGCTAATGTTCTATGTGATGAAGCCGGAAGTGTTACTTCGATCGGCTTATCTTCTCTGCTCCCTTTCACAATTCCTCCAATGCAAGAACTGCAAAACTTGAATGTGACTGCCTTTCCCAATTTGCAGTTTCTGGATTTAAATGGAATGGGTCTGAGGGGAAGCATCCCTGCAGAAATTGGCACACTTACAAAGCTCACCGATCTTGATTTGTCTCACAATAGCCTCCAAGGTAAGCTACCATCTAAAGCTCTTTCAAATCTCACTCAACTTGTTCGTCTCGATTTTTCTGGAAATTCTCTTAGTGGTTTCATTCCATTGTCATTGGGTGAATTGAAGAACTTGGTTTATCTCAACCTTGATTCAAACCTTTTTACAGGCCATATTCCATCACAAGTAGGGAATTTGACAAATCTAACCCAATTACGCCTCTCAAACAATTTTCTCTCTGGTTCTATCCCTCCTACATTAGGTCTACTCAAGAATTTGACAGATTTCTACCTAGAATCTAACCAATTGCAAGATCATATACCTGTTGAGCTACAGAATTTGTCCAGTTTGGTTGCTCTACGCCTTTCTCAAAATAATCTCTCTGTGATTGGTTTAAGCCACAATAGATTAAATGGAAGCATAACTTCTCAAATTGCTTGTGTGAGTGACCTTGATCTTAGCCACAATTCTTTTGTTGGTGAGATTCCATCTCTTTTGGGAATGAAATCAATACTAGATAAGTTGGATCTTAGCTATAATAATTTCACTGGTAAACTTCGCAGGGAACTTGCCCATCTATCAAATATAAACCTTTCATACAATTCTTTTAACTTTTCACCAGATCCTGAATTCAAGTTACACTCACCAGATTATTGTTCTTTTCCAAGACACTCGCTGATCAGTAACAACCCACCAGATTTTTCATTGTGCTTTAGTTCCCTCCAAACTAATTCTCATACTAGTGAAGTTAATCTTAGCATTGAAATTGCTCTTCCCATCATCTTCACCCTTCTTGTTAACGGAGACTTGTTTTCTATATGGAATTATGATGGTAAAATTGCATTTGAAGATATCATTACAGCAACAGAAGACTTTGACATCAAATACTGCATTGGGACTGGTGCATATGGCAGCGTTTATAGAGCCCAATTACCGACTGGAAAAATTGTTTCATTGAAGAAACTTCAGCGAATTGAATCTCAAAATCCATCTTTCAATAAAAGTTTTCACAATGAGGTGAAGATGTTAACAAAAATCCGTCATAGAAACATTGTAAAGCTTCATGGCTTTTGCCTACACAATCGAGCTTTGGAAACATTAGTAGGAAGACATCCTGGAGATTTGATCTCAGCCTTATCAAACACAACTACTCAAAACATGTTATTGAAGGACATCCGAGATCCACGAATTCCTCTTCCTAACTCTCGAAAAGATGCTCAAGATATAATGCTTGTTGTTTGTGTTTGA 1533 0.3777 MDEERQALLKSGWWNDYRNVSSHCDWANVLCDEAGSVTSIGLSSLLPFTIPPMQELQNLNVTAFPNLQFLDLNGMGLRGSIPAEIGTLTKLTDLDLSHNSLQGKLPSKALSNLTQLVRLDFSGNSLSGFIPLSLGELKNLVYLNLDSNLFTGHIPSQVGNLTNLTQLRLSNNFLSGSIPPTLGLLKNLTDFYLESNQLQDHIPVELQNLSSLVALRLSQNNLSVIGLSHNRLNGSITSQIACVSDLDLSHNSFVGEIPSLLGMKSILDKLDLSYNNFTGKLRRELAHLSNINLSYNSFNFSPDPEFKLHSPDYCSFPRHSLISNNPPDFSLCFSSLQTNSHTSEVNLSIEIALPIIFTLLVNGDLFSIWNYDGKIAFEDIITATEDFDIKYCIGTGAYGSVYRAQLPTGKIVSLKKLQRIESQNPSFNKSFHNEVKMLTKIRHRNIVKLHGFCLHNRALETLVGRHPGDLISALSNTTTQNMLLKDIRDPRIPLPNSRKDAQDIMLVVCV 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00558 510 Pfam Leucine rich repeat 90 149 IPR001611 GO:0005515
Vimu9g00558 510 PANTHER LEUCINE RICH REPEAT KINASE 2 57 457 - -
Vimu9g00558 510 SMART LRR_sd22_2 88 115 - -
Vimu9g00558 510 SMART LRR_sd22_2 185 206 - -
Vimu9g00558 510 SMART LRR_sd22_2 209 229 - -
Vimu9g00558 510 ProSiteProfiles Protein kinase domain profile. 387 510 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu9g00558 510 SMART LRR_typ_2 185 208 IPR003591 -
Vimu9g00558 510 SMART LRR_typ_2 88 112 IPR003591 -
Vimu9g00558 510 SMART LRR_typ_2 137 160 IPR003591 -
Vimu9g00558 510 SMART LRR_typ_2 209 230 IPR003591 -
Vimu9g00558 510 SMART LRR_typ_2 161 184 IPR003591 -
Vimu9g00558 510 SMART LRR_typ_2 285 308 IPR003591 -
Vimu9g00558 510 SMART LRR_typ_2 113 136 IPR003591 -
Vimu9g00558 510 SUPERFAMILY Protein kinase-like (PK-like) 374 476 IPR011009 -
Vimu9g00558 510 Gene3D Ribonuclease Inhibitor 1 153 IPR032675 -
Vimu9g00558 510 Gene3D Ribonuclease Inhibitor 154 223 IPR032675 -
Vimu9g00558 510 FunFam Leucine-rich repeat receptor protein kinase MSP1 359 464 - -
Vimu9g00558 510 Gene3D Phosphorylase Kinase; domain 1 364 463 - -
Vimu9g00558 510 Pfam Protein kinase domain 391 459 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu9g00558 510 FunFam Nuclear pore complex protein NUP107 1 154 - -
Vimu9g00558 510 SUPERFAMILY L domain-like 19 298 - -
Vimu9g00558 510 Gene3D Ribonuclease Inhibitor 224 325 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00558 Vimu-Chr9 6849967 6851943 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00558 63 457 Receptor kinase-like Gene Family AT4G08850 34.426 1.05e-56 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vimu9g00558 Pkinase 1.2e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00558 - - aprc:113851126 430.254