Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00557 ATGGAAGCCAGAGAAGGTATTAGTTCTGGGGTTACAGTGATAGGGGCAGAAGCTCCATCAGCTTATCATGTGGCTCCAAGGAGTGAAGCTCCAAACCAGGTTCATGTCCCCGATGGTGGTGGTGGCGGCGGCATTCTTGGTGCTGCAGCTATTGGTATCTCACCGGTGAGTGTGGGGTTGGATGGATCAGCAAAGAAGAAAAGAGGTAGACCAAGGAAATATGGGCCTGATGGGTCTGTCACTATGGCATTGTCACCAATGCCAATCTCGTCTTCTGCACCATCTTCTAATGATTTTTCATCTGGCAAGAGGGGGAAAATGCGGGGTATGGAGTATAAGCAGTCGAAAAAACTTGGTTTGGATTATCTAGGTGACTTGAATGCATGCTCTGATGGTACAAATTTTATGCCACACATCATCACTGTCAATGCTGGTGAGGACATTACAATGAAGGTGATATCATTCTCTCAACAAGGGCCAAGAGCTATATGTATCTTATCTGCTAATGGTGTAATTTCAAATGTTACACTTCGACAGCCTGATTCTTCTGGGGGTACTTTAACTTATGAGGGCCGTTTTGAGATACTTTCCTTGTCTGGATCATTCATGCCTACTGACAACCAAGGTACAAGAAGCAGGTCTGGTGGAATGTCTGTCTCTCTGGCTAGCCCCGACGGCCGTGTCGTCGGTGGTGGAGTTGCCGGTCTTCTTGTAGCTGCCAGTCCTGTGGTGGTGGGAAGCTTTTTACCAAGCAGCCAGCAAGAGCAGAAACTAAAAAAGCCTAAGTCTACTGATTATGCAGCAGCAGCAGCAGCTGCTGTTTCTCCGGTAATTGCAGTGTCTCCAACGCCAGCACCGCCACCGCCACCACCGCCGGCGAGCAATCCTGAAAAAGAGGATGTGAATATTAATGTAATGAGTGGAGCACATGTGGTGCAAAATTCAGGAAGTATTAACTCTAACCTGAGTCCTCAGAATGCCTTTAGAAGAGATAACTGGGTGAACATGCACTCTATGGCAGACTCAAGAAAGTCAGCTACTGATATTAACATATCTTTGCCTGATTGTTAA 1071 0.4687 MEAREGISSGVTVIGAEAPSAYHVAPRSEAPNQVHVPDGGGGGGILGAAAIGISPVSVGLDGSAKKKRGRPRKYGPDGSVTMALSPMPISSSAPSSNDFSSGKRGKMRGMEYKQSKKLGLDYLGDLNACSDGTNFMPHIITVNAGEDITMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMPTDNQGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVVVGSFLPSSQQEQKLKKPKSTDYAAAAAAAVSPVIAVSPTPAPPPPPPPASNPEKEDVNINVMSGAHVVQNSGSINSNLSPQNAFRRDNWVNMHSMADSRKSATDINISLPDC 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00557 356 MobiDBLite consensus disorder prediction 280 296 - -
Vimu9g00557 356 Pfam Plants and Prokaryotes Conserved (PCC) domain 137 245 IPR005175 -
Vimu9g00557 356 Gene3D - 137 265 - -
Vimu9g00557 356 MobiDBLite consensus disorder prediction 84 102 - -
Vimu9g00557 356 ProSiteProfiles PPC domain profile profile. 132 272 IPR005175 -
Vimu9g00557 356 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 26 317 IPR039605 GO:0003680
Vimu9g00557 356 MobiDBLite consensus disorder prediction 280 299 - -
Vimu9g00557 356 MobiDBLite consensus disorder prediction 60 106 - -
Vimu9g00557 356 SUPERFAMILY AF0104/ALDC/Ptd012-like 135 248 - -
Vimu9g00557 356 CDD DUF296 137 227 IPR005175 -
Vimu9g00557 356 FunFam AT-hook motif nuclear-localized protein 1-like 137 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00557 Vimu-Chr9 6827880 6831279 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00557 10 277 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 56.954 4.10e-92 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00557 - - gmx:100793726 527.709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu9g00557 9 6827880 6831279 Vimu9g00557 9 6827880 6831279 ECH
Vimu6g00276 6 3289042 3294065 Vimu9g00557 9 6827880 6831279 PCT