Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00554 ATGGATTATGGAGGAAAGATTGGTGGAAGTGAAAGAGGTGGGCCTTGTGGTGCCTGCAAGTTTCTGAGGAGAAAGTGTGTGAAGAGTTGCATTTTTGCACCATACTTTGACTCAGACCAAGGAACTGCACATTTTGCTGCAGTTCACAAGGTGTTTGGTGCAAGCAATGCCTCTAAGTTACTCATGAGAATCCCAGCACACAAGCGTCTTGATGCTGTTGTTACTCTTTGCTATGAGGCTTTGGCTAGGGCTAGAGATCCTGTTTATGGTTGTGTTGGTCACCTCTTTGCTCTTCAACAACAGGTTATGAACTTGCAGGCTGAGTTAACCTATGTTCAAGCCCGTTTGGCCACAATGCAGCGCATGCCAATGGCAGTAGCTCCTCTTCCACACCCTCAAAGTTCATCACCACAAACTCTTCCTTGCTCAGATCATTTGGCGTCAAATGCTGAAATGCAGAGTGTCCCTATTATGCAGTATGATCCTCTTCAACCACATTCAGCATCATTAGAGTTAAGCAGCATCCTTTTCAATCAATCAGATCAACAACTGGAGGATAGGGAACTCCAAACTTTGGCTCGAGAATTTGTCACCAAATACTTGCCCGGAGTAAGATTCCAGCAATCTAACTCTCCCTAA 639 0.4507 MDYGGKIGGSERGGPCGACKFLRRKCVKSCIFAPYFDSDQGTAHFAAVHKVFGASNASKLLMRIPAHKRLDAVVTLCYEALARARDPVYGCVGHLFALQQQVMNLQAELTYVQARLATMQRMPMAVAPLPHPQSSSPQTLPCSDHLASNAEMQSVPIMQYDPLQPHSASLELSSILFNQSDQQLEDRELQTLAREFVTKYLPGVRFQQSNSP 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00554 212 PANTHER LOB DOMAIN CONTAINING PROTEIN 12 144 - -
Vimu9g00554 212 ProSiteProfiles LOB domain profile. 14 116 IPR004883 -
Vimu9g00554 212 Pfam Lateral organ boundaries (LOB) domain 15 113 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00554 Vimu-Chr9 6759601 6762759 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00554 13 210 AS2 family AT4G00210 54.167 2.41e-71 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vimu9g00554 LOB 3.6e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00554 - - gmx:100791377 385.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g00281 6 3366991 3370180 Vimu9g00554 9 6759601 6762759 PCT