Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00546 ATGGATCCTGTAGCAGCACAAGGACGTCCTCTCCCTCCCCCTTTTCTCACTAGAGATCTTCACTTACACCCTCACCACCAATTTCAGCCCCACCACAACCACCAAAACACCGAGGATGAAGCTGCCAATGGCCGCGGCCAGAAGCGGGATCGCGACGAGAACGCCGGCGCTGGAGGTGGCTCCTCCACACCCCCTCACGCCGGCGGAGAAGGCCAGGAACCCGGGTCCGGAGATGGAGGTGGAAGTGAAATGGCCAGAAGGCCGAGAGGAAGACCTGCAGGCTCCAAAAACAAGCCCAAACCACCCATTATCATCACAAGGGACAGTGCCAACGCTCTCCGATCCCATGTTATGGAAATCGCCAACGGCTGCGACATCATGGAGAGCGTCACCGCCTTCGCCAGGCGGCGACAGCGTGGTGTCTGTGTTCTCAGCGGCAGCGGCACCGTCACCAACGTGACCCTCCGGCAACCAGCTTCCCCTGGTGCCGTTGTGACCCTTCACGGAAGGTTCGAGATTCTATCCCTTTCCGGTTCATTTCTGCCGCCGCCGGCTCCGCCTGCCGCTTCAGGACTAGCCATTTACCTTGCTGGCGGACAGGGACAGGTAGTAGGTGGAAGCGTGGTGGGACCCCTTGTGGCTTCGGGTCCTGTTGTTATCATGGCTGCTTCATTTGGTAATGCTGCTTATGAGAGACTACCCTTAGAGGAAGAGGAAACTCCGGTACCGGTTCCGGGCACCGGAGGATTAGGGTCGCCGGGAATTGCAGGGACGCAGCAACAATCGCAATCGCAGCAGCAGCAACAGCCGCAACAGCTTGTGGGAGATCCTAACAGTTCTTCTCTCTTCCATGGAGTTCCGCAGAATCTTCTCAATTCGGTTCAATTACCTGCTGAGGGTTATTGGGGTGGCACTGCTCGTCCCCCTTTTTAA 933 0.5788 MDPVAAQGRPLPPPFLTRDLHLHPHHQFQPHHNHQNTEDEAANGRGQKRDRDENAGAGGGSSTPPHAGGEGQEPGSGDGGGSEMARRPRGRPAGSKNKPKPPIIITRDSANALRSHVMEIANGCDIMESVTAFARRRQRGVCVLSGSGTVTNVTLRQPASPGAVVTLHGRFEILSLSGSFLPPPAPPAASGLAIYLAGGQGQVVGGSVVGPLVASGPVVIMAASFGNAAYERLPLEEEETPVPVPGTGGLGSPGIAGTQQQSQSQQQQQPQQLVGDPNSSSLFHGVPQNLLNSVQLPAEGYWGGTARPPF 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00546 310 MobiDBLite consensus disorder prediction 19 55 - -
Vimu9g00546 310 Gene3D - 113 242 - -
Vimu9g00546 310 MobiDBLite consensus disorder prediction 238 286 - -
Vimu9g00546 310 Pfam Plants and Prokaryotes Conserved (PCC) domain 114 226 IPR005175 -
Vimu9g00546 310 MobiDBLite consensus disorder prediction 253 286 - -
Vimu9g00546 310 CDD DUF296 114 225 IPR005175 -
Vimu9g00546 310 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 37 290 IPR014476 GO:0003680
Vimu9g00546 310 FunFam AT-hook motif nuclear-localized protein 113 240 - -
Vimu9g00546 310 PIRSF ESCAROLA 16 310 IPR014476 GO:0003680
Vimu9g00546 310 SUPERFAMILY AF0104/ALDC/Ptd012-like 110 245 - -
Vimu9g00546 310 ProSiteProfiles PPC domain profile profile. 110 246 IPR005175 -
Vimu9g00546 310 MobiDBLite consensus disorder prediction 1 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00546 Vimu-Chr9 6586549 6587481 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00546 1 310 AT-hook Motif Nuclear Localized (AHL) Family AT2G45430 65.244 1.49e-92 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00546 - - gmx:100816243 464.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu9g00546 9 6586549 6587481 Vimu9g00546 9 6586549 6587481 ECH