Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00529 ATGAAACAAATTAGTGCATATTCCGGGTTACTGTGTGGAGGGATATATGGAAGGAAAGGGCTCCATTCTCTGCCCTTGGCAAGGATAAAGAAGATCATGAAGAAACCAGGGGAGGATGTTAAAATGATGTCAGAGGACACTCCAATTATTTTCTCCAAGGCTTGTGAGCTCTTCGTTAAGGACATTACACAAAGAGGACTTAAACTCAACAGTATTTCTGTATTAGCAAAAGAATCAATTGTACAAAAATCAAAGTACAAGTATATGGTTCTACGGGACCCTAATCCCCCTTCTAAGGTCAATAGCCTGACTTTACAAGAAAACTACACACCGTCAACAGAATTACAATTGCACTATTTATAG 363 0.3884 MKQISAYSGLLCGGIYGRKGLHSLPLARIKKIMKKPGEDVKMMSEDTPIIFSKACELFVKDITQRGLKLNSISVLAKESIVQKSKYKYMVLRDPNPPSKVNSLTLQENYTPSTELQLHYL 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00529 120 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 19 68 - -
Vimu9g00529 120 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 23 68 IPR003958 -
Vimu9g00529 120 SUPERFAMILY Histone-fold 15 65 IPR009072 GO:0046982
Vimu9g00529 120 Gene3D Histone, subunit A 16 95 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00529 Vimu-Chr9 6327617 6327979 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00529 22 67 CCAAT-HAP5 Transcription Factor Family AT1G56170 58.696 2.77e-13 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Vimu9g00529 CBFD_NFYB_HMF 2.4e-10 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00529 - - ccaj:109817175 102.834