LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu9g00501	ATGCCATCGCGTCCGCCGCCACCCTCGCCTCACGCGGCGGTTTCCGCCATCTCGCACCGTCGAGAGATCATTCTCTGCGGGGTAATCGGCGGGGCGCTCTTCTTAACGGCGCTTATCGTCTCTGTCACGGTCTTTCTCTACCGGAAACTTTCTTACAACCGAACGGCGCCGTTTGAGCACAACCAGCGACGTTTCTCTTACTCTGTTCTACGCCGTGCGACGAACTCGTTCTCGCCGTCGACGAAGCTCGGACACGGCGGGTTCGGTTCGGTTCACAAAGCGACTCTGCCTTCCGGCCAGACCGTGGCGTTGAAGGTTATGGACTCGCCCGGGTCAATCCAGGGGGAGAGAGAGTTTCACAACGAGTTGACACTGTGTTCGAATCTGAAGTCGCCGTTTGTTATTTCGTTGCTCGGTTTTTCTTCGGACCGGCGCGGTCGGAAGCTGGTTCTGGTTTACGAGCTGATGCCGAACCGGAGTTTGCAGGATGCGTTGCTGGACCGGCGGTGTCCGGAGCTGATGTGTTGGGGGAAGAGGTTTGACATCGCCGTTTCGGTGGCGATGGGGTTGGAGTATTTGCACCACGCGTGTGAGCCTCCGGTGATTCATGGGGATATAAAGCCGAGTAATGTGTTGCTGGATGAGGATTTTGGAGCGAAGATTGGGGATTTTGGGCTTGCTAGGGTTAAGGCGGTGGAGGATCTGGGAATGGTGGAGGAAAAGAAGGAAGGGGTTGTGGAAATTGGGGTCGAGGAGTTTGGGGTGATGGAGGAGGGGGAGAGTGTGAGTGTGGTTGATGTTGACCGGTCGCCGGAGAGTTGTCCTGTGAGGGTTGTCGATTACTCGGACGCGTCGCCGGTGGGGGGTGATAAGTTGAGTGTGGTGTCAGATGGGTGCTTTGAAAGTGTTGATAGTGAGAATGTGAATTTAAATAAGAAGAAGGGTGGTGGTGGTGGTGGTTCAGGGAGGGATTGGTGGTGGAGGCAGGAGAGTGGGGGAGGCGGGGAATCGGGGAGAGTGAAGGATTATGTGATGGAGTGGATCGGAAGTGAGATTAAGAAAGAGAGACCGAAGAGTGAATGGGTTGATTCGTGTTCATCTTCTTCTCCTAAGGTGGAGAATGAGAATGGAAATGTTAATGGGAATGAGAAAAGTAAAAAGAAGGAGAGGAAGAAGTTGGATTGGTGGGCCTCTCTTGATGAGGAGAAGGTTAAAAGTAAGGTGAAGAAGAATCGGAAGCCGAGGGAGTGGTGGAAGGAGGAGTTTTGTGAGGAGTTGTCTGAGAAGAATAAGAAGAAGAAGAGGGGTTTGGAGTGGTGGCAGAGGGAGGAGGAAGGGGTGGAGCAGAAGAAGAAGAGGAAGAGTAAGGGGAGTAGAGGGAGTATTGATTGGTGGTTGGATGGGTTGAGTGGGGAGATAAGGAACAATGGGAGAAGGAACAGCCAGGATTGGGGGATTAGTGGGGATGTGCCGAAGAGTGGTGGGATCAGTAGCACTCCTAGTATGAGGGGGACTGTGTGTTACATTGCTCCGGAGTATGGTGGAGGAGGGCAATTGTCTGAAAAATGTGATGTGTACAGTTTTGGGGTTCTGCTTTTGGTTCTGGTGGCGGGCAGGCGGCCGCTGCAGGTGACTGCATCGCCGATTTCTGAGTTTGAGAGGGCCAATTTGATTTCCTGGGCCAGGCAGCTTGCTCACAATGGGAGGCTTTTAGATCTTGTTGACACTTCTATTCATTCATTGGATAAGGAGCAGGCGCTGCTCTGCATCACCATAGCCTTGTTGTGTTTGCAGAGGTGCCCAGGGAAGAGGCCTTCCATGAAGGAGGTTGTGGGAATGCTCAATGGGGAAGCTGATCCGCCACATTTACCGTTCGAATTCTCACCGTCACCGCCGTCAAATTTCCTGTTCAAGGGGCGGAAGAAGGCTCGGTGA	1935	0.5328	MPSRPPPPSPHAAVSAISHRREIILCGVIGGALFLTALIVSVTVFLYRKLSYNRTAPFEHNQRRFSYSVLRRATNSFSPSTKLGHGGFGSVHKATLPSGQTVALKVMDSPGSIQGEREFHNELTLCSNLKSPFVISLLGFSSDRRGRKLVLVYELMPNRSLQDALLDRRCPELMCWGKRFDIAVSVAMGLEYLHHACEPPVIHGDIKPSNVLLDEDFGAKIGDFGLARVKAVEDLGMVEEKKEGVVEIGVEEFGVMEEGESVSVVDVDRSPESCPVRVVDYSDASPVGGDKLSVVSDGCFESVDSENVNLNKKKGGGGGGSGRDWWWRQESGGGGESGRVKDYVMEWIGSEIKKERPKSEWVDSCSSSSPKVENENGNVNGNEKSKKKERKKLDWWASLDEEKVKSKVKKNRKPREWWKEEFCEELSEKNKKKKRGLEWWQREEEGVEQKKKRKSKGSRGSIDWWLDGLSGEIRNNGRRNSQDWGISGDVPKSGGISSTPSMRGTVCYIAPEYGGGGQLSEKCDVYSFGVLLLVLVAGRRPLQVTASPISEFERANLISWARQLAHNGRLLDLVDTSIHSLDKEQALLCITIALLCLQRCPGKRPSMKEVVGMLNGEADPPHLPFEFSPSPPSNFLFKGRKKAR	644

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu9g00501	644	ProSiteProfiles	Protein kinase domain profile.	77	625	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vimu9g00501	644	PANTHER	OS07G0586332 PROTEIN	1	644	IPR044576	-
	Vimu9g00501	644	FunFam	Os07g0541700 protein	156	244	-	-
	Vimu9g00501	644	MobiDBLite	consensus disorder prediction	362	379	-	-
	Vimu9g00501	644	MobiDBLite	consensus disorder prediction	311	336	-	-
	Vimu9g00501	644	ProSitePatterns	Protein kinases ATP-binding region signature.	83	105	IPR017441	GO:0005524
	Vimu9g00501	644	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	201	213	IPR008271	GO:0004672\|GO:0006468
	Vimu9g00501	644	Gene3D	Phosphorylase Kinase; domain 1	41	155	-	-
	Vimu9g00501	644	MobiDBLite	consensus disorder prediction	622	644	-	-
	Vimu9g00501	644	MobiDBLite	consensus disorder prediction	359	390	-	-
	Vimu9g00501	644	SMART	serkin_6	77	614	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vimu9g00501	644	SUPERFAMILY	Protein kinase-like (PK-like)	52	632	IPR011009	-
	Vimu9g00501	644	Pfam	Protein kinase domain	80	229	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vimu9g00501	644	Pfam	Protein kinase domain	483	611	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vimu9g00501	644	Gene3D	Transferase(Phosphotransferase) domain 1	156	249	-	-
	Vimu9g00501	644	Gene3D	Transferase(Phosphotransferase) domain 1	473	620	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu9g00501	Vimu-Chr9	5890342	5892276	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu9g00501	492	614	Receptor kinase-like Gene Family	AT3G58690	37.209	8.42e-14	72.0

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-XI	Vimu9g00501		Pkinase	3.4e-26	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu9g00501	-		-	gmx:100814933	1013.83