LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu9g00494	ATGGCTAGATTCAAGATAAACCATCACTTCTTGTTTTCTTCTATTCTAATCTTTTTGGTTGTACTTCCAACTTTAGTTACAGCAGAATGTACATGTGACGAAGAAGACGAGAATCGTGATAAAGGAAAAGCTATGAGATACAAAATAGCTGCTTTAGTATCAATTTTAATTGCGAGTGCAGTTGGGGTGTGTATTCCTCTTCTGGGTAAAGTCGTACCAGCATTGAGTCCGGAAAAGAATGTTTTCTTCTTAGTAAAAGCTTTTGCTGCAGGTGTAATTCTGGCCACTGGATTCATCCACGTCTTACCTGATGCCTTTGAAAATCTGACCTCACCTTGCTTGAAGGAGCATCCATGGGGAGATTTTCCCTTCACTGGGTTTGTGGCAATGTGTACTGCCATGGGAACTCTCATGGTGGATACTTATGCCACTGCTTATTTTCAGAAATACCATTCCAAAGAAGTACAGAATGACAGTGGAGATGTGGAGAAAGAGAGAGAACACGAGGGGCATGTGGATCTTCATACGCATGCATCGCATGGCCATGCTCATGGCCCTGTTCACTCTCACGACCACTCCTCTCAGCTTCTTCGCCATCGAGTCATATCACAGGTGTTGGAGCTAGGAATTATTGTTCACTCTGTTATTATTGGAATTTCTCTGGGAGCTTCAGAAAATCCTAACACGATAAGACCACTAGTAGCTGCGTTAACTTTTCATCAATTCTTTGAAGGCATGGGACTTGGAAGCTGTATATCTCAGGCAAACTTCAAGAGAGTATCTGTGACAGTAATGGGATTGTTCTTTGCATTGACTACTCCAGTCGGAATTGGAATTGGCATAGGAATTTCAAGTGTTTATGATGAAAACAGTCCAACTGCTCTTATTGTGGAAGGAGTTTTTAATGCAGCTTCAGCAGGGATTTTAATTTACATGGCTTTGGTTGATCTTCTTGCCAATGATTTCATGAGTCCAAGAATGCAACAAAGTAGCAGACTCTGTTTTGGAGCCAATGTTTCTCTATTGCTTGGAGCTGGTTTGATGTCTATGATAGCTAAATGGGCTTAA	1068	0.4139	MARFKINHHFLFSSILIFLVVLPTLVTAECTCDEEDENRDKGKAMRYKIAALVSILIASAVGVCIPLLGKVVPALSPEKNVFFLVKAFAAGVILATGFIHVLPDAFENLTSPCLKEHPWGDFPFTGFVAMCTAMGTLMVDTYATAYFQKYHSKEVQNDSGDVEKEREHEGHVDLHTHASHGHAHGPVHSHDHSSQLLRHRVISQVLELGIIVHSVIIGISLGASENPNTIRPLVAALTFHQFFEGMGLGSCISQANFKRVSVTVMGLFFALTTPVGIGIGIGISSVYDENSPTALIVEGVFNAASAGILIYMALVDLLANDFMSPRMQQSSRLCFGANVSLLLGAGLMSMIAKWA	355

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu9g00494	355	Pfam	ZIP Zinc transporter	47	352	IPR003689	GO:0016020\|GO:0030001\|GO:0046873\|GO:0055085
	Vimu9g00494	355	PANTHER	ZINC/IRON TRANSPORTER	44	349	-	-
	Vimu9g00494	355	NCBIfam	ZIP zinc/iron transport family	30	355	IPR004698	GO:0005385\|GO:0016020\|GO:0071577

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu9g00494	Vimu-Chr9	5814614	5816199	Dispersed/Proximal

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu9g00494	27	355	Inorganic Solute Cotransporters	AT3G12750	56.213	1.12e-132	381

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu9g00494	K14709		-	gmx:547695	545.428

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