Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00464 ATGAAAATGATGAGTATGATATCCCAGTGGTATTTGTACAAGTTATTGGTCAAACTGGTGGTGCTGCAAAAGCAGCCAGTGGTTAGTGCATTTCCAGAAATACTGGTATTTCACATGGGAGCGTGGAAGGTAGTGGCGCGTGAGAGTGGGAGTTCCCTTTCACTTGCCCTAAACTGCAGGAAAATTAAAAGTATGCAGGAAGAAAGAGCAGGGAGGATAGAGAACAAAATCAACCGCCAAGTTACTTTCTCAAAAAGAAGGAACGGTTTGCTCAAGAAAGCCTATGAGCTCTCAGTTCTCTGTGATGCTGAGGTTGCTCTCATCATTTTCTCAAGCAGAGGGAAGCTCTATGAATTTGGAAATGTTGGCATTACCAAAACTATTGACCGATACCAACGTTGCTCGTTTACTCCTCAAGATGAACAACATGTTGAATGTGAAACTCAGAGCTGGTACCAAGAGGTGTCAAAGCTGAAGGCAAAGTACGAGTCTCTGCAAAGGACCCAGAGGCATTTGCTTGGAGAAGATCTTGGACCATTGAACATAAAGGAGTTGCAGAATCTTGAGAAACAGCTTGAAGGGGCATTAGCACAAGCCAGACAAAGGAAGACACAAATCATGATTGAACAAATGGAAGAGCTTCGCAGAAGGGAGCGCCATCTTGGAGATATGAACAAGCAGCTCAGACTGAAGCTTGAATCAGAGGGGTTTAATCTTAAAGCTATGGAAAGCTTGTGGAGCTCTACTTCAGCTGCTGGAAACAGTGCATTTCCCTTTCAACCTCCTCAAACCAACCCTTTGGATTACCAGACTGAACCCTTTTTGCAAATAGGGTACCAACAATATGTTCAAGCTGAGGCATCTAATGTTCCAAAGAGCATGGCTTGTGAGACTAACTTCATGCAGGGATGGATCCTTTGA 921 0.4387 MKMMSMISQWYLYKLLVKLVVLQKQPVVSAFPEILVFHMGAWKVVARESGSSLSLALNCRKIKSMQEERAGRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGNVGITKTIDRYQRCSFTPQDEQHVECETQSWYQEVSKLKAKYESLQRTQRHLLGEDLGPLNIKELQNLEKQLEGALAQARQRKTQIMIEQMEELRRRERHLGDMNKQLRLKLESEGFNLKAMESLWSSTSAAGNSAFPFQPPQTNPLDYQTEPFLQIGYQQYVQAEASNVPKSMACETNFMQGWIL 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00464 306 Gene3D - 75 145 IPR036879 GO:0003677|GO:0046983
Vimu9g00464 306 ProSiteProfiles MADS-box domain profile. 72 123 IPR002100 GO:0003677|GO:0046983
Vimu9g00464 306 FunFam MADS-box transcription factor 1 75 149 - -
Vimu9g00464 306 CDD MADS_MEF2_like 72 135 IPR033896 GO:0000977|GO:0045944
Vimu9g00464 306 PANTHER SERUM RESPONSE FACTOR HOMOLOG 72 240 - -
Vimu9g00464 306 Coils Coil 211 231 - -
Vimu9g00464 306 ProSiteProfiles K-box domain profile. 148 238 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vimu9g00464 306 Pfam K-box region 147 232 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vimu9g00464 306 SUPERFAMILY SRF-like 71 152 IPR036879 GO:0003677|GO:0046983
Vimu9g00464 306 PRINTS MADS domain signature 100 121 IPR002100 GO:0003677|GO:0046983
Vimu9g00464 306 PRINTS MADS domain signature 85 100 IPR002100 GO:0003677|GO:0046983
Vimu9g00464 306 PRINTS MADS domain signature 65 85 IPR002100 GO:0003677|GO:0046983
Vimu9g00464 306 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 72 119 IPR002100 GO:0003677|GO:0046983
Vimu9g00464 306 Coils Coil 182 205 - -
Vimu9g00464 306 SMART madsneu2 57 122 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00464 Vimu-Chr9 5541213 5547166 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00464 72 306 MADS-box Gene Family AT2G45650 65.432 2.02e-109 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vimu9g00464 K-box 4.5e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00464 K09264 - gmx:100820061 426.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu9g00464 9 5541213 5547166 Vimu9g00464 9 5541213 5547166 ECH
Vimu9g00462 9 5508297 5509004 Vimu9g00464 9 5541213 5547166 ECH