Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00463 ATGCAGCAGTCAATAGAACGTTACCGCAGACATACCAAAAGTGAAACCTCAGCTACATTCAGATCACTTGAACAAAACATGCAGGATCTGAAGCAAGAAGCAGCAAACATGATGAAGAAGATTGAAGTTCTTGAAGCTGCAAAACGGAAATTCTTGGGAGAAGGTTTGGGGTCTTGCTCCGTTGAGGAATTGCTACGGATAGAACAACAGTTGGAGAGGAGTATAAGTAACGTTCGAGCAAGAAAGCTCCAGCTTTTCAGGGATCAAATTGATCAACTGAAAGAAAAGGAAAAAGCCCTAGTAGATGAAAATGCCAAGCTCACTGAAAATGTAAGGCTAGCTGAGAAGCATGGCATGCATCTACAGCTAGCAACAAAGGATCAGAATGAAAATCAACCCCAAAACTGTGCAGAAAGTAGCCCAAGTTCAGATGTGGTGACTGAATTGTTCATTGGACTTCCAGATACAAGAACAAAAGGCCTCTCTCATCAGGTCTAG 498 0.4237 MQQSIERYRRHTKSETSATFRSLEQNMQDLKQEAANMMKKIEVLEAAKRKFLGEGLGSCSVEELLRIEQQLERSISNVRARKLQLFRDQIDQLKEKEKALVDENAKLTENVRLAEKHGMHLQLATKDQNENQPQNCAESSPSSDVVTELFIGLPDTRTKGLSHQV 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00463 165 Pfam K-box region 24 111 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vimu9g00463 165 Coils Coil 83 110 - -
Vimu9g00463 165 ProSiteProfiles K-box domain profile. 27 119 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vimu9g00463 165 Coils Coil 61 81 - -
Vimu9g00463 165 Coils Coil 13 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00463 Vimu-Chr9 5520544 5525399 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00463 1 98 MADS-box Gene Family AT2G45660 64.286 1.82e-36 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00463 - - gmx:100807963 248.054
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu9g00463 9 5520544 5525399 Vimu9g00463 9 5520544 5525399 ECH
Vimu6g00316 6 3802556 3815525 Vimu9g00463 9 5520544 5525399 PCT