Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00462 ATGGTGAGAGGAAAGACTCAAATGAAGCGTATAGAGAACGCCACAAGCCGGCAAGTAACTTTCTCAAAGCGGCGAAATGGGTTGCTGAAGAAGGCTTTTGAGCTATCAGTTCTGTGTGATGCTGAGGTTGCTCTTATCATCTTCTCTCCAAGAGGGAAGCTCTATGAATTTGCTAGCAACAGGTTCCACTATTTCTCCTCTTTCAACTTTCCCTTTTCTTGTGTCAATGCTTCTGCTTCTGAGGTTAACATAATGAAGCAGTGCTTCAAACCTCCTAAACCAAAGGTTGGTGGAATGAATAGAGGAACCTTGTTCCCTCAGTAA 324 0.4352 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFASNRFHYFSSFNFPFSCVNASASEVNIMKQCFKPPKPKVGGMNRGTLFPQ 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00462 107 SUPERFAMILY SRF-like 3 77 IPR036879 GO:0003677|GO:0046983
Vimu9g00462 107 CDD MADS_MEF2_like 3 63 IPR033896 GO:0000977|GO:0045944
Vimu9g00462 107 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vimu9g00462 107 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vimu9g00462 107 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vimu9g00462 107 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vimu9g00462 107 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vimu9g00462 107 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vimu9g00462 107 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vimu9g00462 107 Gene3D - 13 89 IPR036879 GO:0003677|GO:0046983
Vimu9g00462 107 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00462 Vimu-Chr9 5508297 5509004 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00462 1 60 MADS-box Gene Family AT2G45660 95.000 7.65e-37 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vimu9g00462 SRF-TF 2.1e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00462 - - egt:105963738 118.242
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu9g00462 9 5508297 5509004 Vimu9g00462 9 5508297 5509004 ECH
Vimu9g00462 9 5508297 5509004 Vimu9g00464 9 5541213 5547166 ECH